RchiOBHm_Chr6g0254771

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
9707936 .. 9708354
419 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGATGAAGTTGAGATTTTCTACAACACTTTATTTTTCGGACCTACCGGCGGCAAACCTCAAAAACGACTTCAATTGGGTACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAAGCTCCTACCGGAGTGGTAGAAGGGATTGCTGAGTTTGTGACCTTGAAGTCTGGTTTTATACCCGCCTCGTTTGCAAAACCCGGTGATGGTAACAGTTGGGACGAGGGTTACAGCGTAACTGCACGGTTCCTGGATTATTGCAATGGCCTTAAAGACGGGTTTGTGGCAGAACTTAACAAGAAGATGATAGATGGTTACAGTAACGATTTCTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

5.57

Isoelectric Point (pI)

13.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 5 - 114 1.3e-33 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
AciI CCGC 2 cut(s) 50, 192
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 49, 215
AgsI TTSAA 2 cut(s) 73, 175
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 40
BccI CCATC 2 cut(s) 209, 314
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 210, 260
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 210, 260
BpuMI CCSGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 215
Bse118I RCCGGY 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 104, 277
BseBI CCWGG 1 cut(s) 260
BseLI CCNNNNNNNGG 2 cut(s) 49, 215
BseMI GCAATG 2 cut(s) 104, 277
BseMII CTCAG 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 3 cut(s) 47, 138, 210
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 49, 215
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 2 cut(s) 50, 192
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 104, 277
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 224, 255, 329
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 208, 258
BsuRI GGCC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 89
CviJI RGCY 2 cut(s) 131, 276
CviKI_1 RGCY 2 cut(s) 131, 276
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 92
FaiI YATR 2 cut(s) 90, 188
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 346
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 276
HapII CCGG 3 cut(s) 47, 138, 210
Hin1II CATG 1 cut(s) 92
HpaII CCGG 3 cut(s) 47, 138, 210
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 224, 255, 329
HpyCH4V TGCA 4 cut(s) 109, 203, 251, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 60, 151, 165, 223, 245, 272
MaeI CTAG 1 cut(s) 346
MaeIII GTNAC 6 cut(s) 166, 218, 236, 244, 323, 329
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 322
MfeI CAATTG 1 cut(s) 73
MluCI AATT 1 cut(s) 73
MnlI CCTC 4 cut(s) 68, 105, 205, 226
MseI TTAA 3 cut(s) 279, 303, 342
MspI CCGG 3 cut(s) 47, 138, 210
MspR9I CCNGG 2 cut(s) 210, 260
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 210
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 40
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 279, 303, 342
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 210, 260
SetI ASST 5 cut(s) 45, 60, 127, 133, 173
SinI GGWCC 1 cut(s) 40
Sse9I AATT 1 cut(s) 73
SsiI CCGC 2 cut(s) 50, 192
SspMI CTAG 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 208, 258
TaaI ACNGT 3 cut(s) 224, 255, 329
TasI AATT 1 cut(s) 73
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 279, 303, 342
Tru9I TTAA 3 cut(s) 279, 303, 342
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 40
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.