RchiOBHm_Chr6g0255901

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
11341600 .. 11343051
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
ATGAAAATGGACCTCACAGAAGTGTCCGATTCCAAACCACTTGTCATTCCCAATTTACCACATGAGTTCAAGATTCCAGGAAACCAAATACCTGATTTCATGAAACAAGAATGTGAGTTGAAACGTTTCGGCCAATCGGCTGCTGAATCGGAGAGGAGCAGCTTTGGGGTTGTTGTTAACAGTTTCTATGAGATTGAACCAGCCTATGCTGATCATTATAGGAACGTTCTGGGAATCAAGGCTTGGCATATAGGCCCAACATTTCTATGCCATAAGGAGATTGAAGATAAGGCACGTAGAGGACTAGCAAACTCCATAGATGGACATGAATGTCAGAAATGGCTAGATTCCAAGAAACCCAATTCAGTAATTTATGTGAGCTTCGGGAGTGTGGTCAAGTTTGATGATGCTCAGCTCATGGAAATTGCTTTGGGACTCGAAGCTTCCGGATTTGGAGGGGAAAGAGTGAAGAGTGAAGCTATAGAGAAGGTGGTGAAACAGATTATGGTGGGTGAAGAAGCAGAGGAAATGAGAAGCAGAGCCAAGAAGCATGGGGAAGTGGCAAGAAGGAGTGTGGTGGAAGGTGGATCATCATATAATGATTTGAATGGCTTGATTGCAGAATTGAGGATCCATACCACTGCTTCCAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

218

Amino Acids

24.26

Weight (kDa)

5.85

Isoelectric Point (pI)

61.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 446
AclI AACGTT 2 cut(s) 124, 225
AclWI GGATC 3 cut(s) 595, 625, 638
AcoI YGGCCR 1 cut(s) 130
AgsI TTSAA 5 cut(s) 70, 121, 197, 284, 607
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 6 cut(s) 162, 381, 415, 443, 479, 651
AluI AGCT 6 cut(s) 162, 381, 415, 443, 479, 651
AlwI GGATC 3 cut(s) 595, 625, 638
Aor13HI TCCGGA 1 cut(s) 446
AoxI GGCC 2 cut(s) 130, 253
ApeKI GCWGC 2 cut(s) 140, 159
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 10, 254
AsuHPI GGTGA 2 cut(s) 505, 524
AvaII GGWCC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 127, 171
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 211
BfaI CTAG 2 cut(s) 305, 344
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 2 cut(s) 141, 160
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 2 cut(s) 142, 161
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 254
BmiI GGNNCC 1 cut(s) 632
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 446
BseBI CCWGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 127, 171
BshFI GGCC 2 cut(s) 132, 255
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 132, 255
Bsp13I TCCGGA 1 cut(s) 446
Bsp143I GATC 3 cut(s) 211, 587, 630
Bsp1720I GCTNAGC 1 cut(s) 411
BspANI GGCC 2 cut(s) 132, 255
BspCNI CTCAG 1 cut(s) 424
BspEI TCCGGA 1 cut(s) 446
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 632
BspPI GGATC 3 cut(s) 595, 625, 638
BssMI GATC 3 cut(s) 211, 587, 630
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 411
BstKTI GATC 3 cut(s) 214, 590, 633
BstMBI GATC 3 cut(s) 211, 587, 630
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 127, 171
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 2 cut(s) 132, 255
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 639
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 10, 254
CviAII CATG 5 cut(s) 62, 100, 326, 418, 551
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 213, 589, 632
DpnII GATC 3 cut(s) 211, 587, 630
DrdI GACNNNNNNGTC 1 cut(s) 330
DseDI GACNNNNNNGTC 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 65, 103, 329, 421, 554
FaqI GGGAC 1 cut(s) 447
FatI CATG 5 cut(s) 61, 99, 325, 417, 550
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 141, 160
Fsp4HI GCNGC 2 cut(s) 141, 160
FspBI CTAG 2 cut(s) 305, 344
GluI GCNGC 2 cut(s) 141, 160
HaeIII GGCC 2 cut(s) 132, 255
HapII CCGG 1 cut(s) 447
Hin1II CATG 5 cut(s) 65, 103, 329, 421, 554
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 6 cut(s) 29, 73, 146, 234, 347, 435
HpaI GTTAAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 505, 524
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 28, 151, 336
Hpy188III TCNNGA 4 cut(s) 70, 100, 385, 447
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 481, 561, 575
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 3 cut(s) 124, 225, 295
HpyCH4V TGCA 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 3 cut(s) 124, 225, 295
Hsp92II CATG 5 cut(s) 65, 103, 329, 421, 554
Kpn2I TCCGGA 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 211
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 211, 587, 630
LmnI GCTCC 2 cut(s) 156, 656
LpnPI CCDG 6 cut(s) 63, 90, 105, 213, 215, 460
Lsp1109I GCAGC 2 cut(s) 127, 171
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 305, 344
MaeII ACGT 3 cut(s) 124, 225, 295
MalI GATC 3 cut(s) 213, 589, 632
MboI GATC 3 cut(s) 211, 587, 630
MboII GAAGA 3 cut(s) 296, 481, 527
MflI RGATCY 1 cut(s) 630
MluCI AATT 5 cut(s) 52, 361, 369, 423, 623
MlyI GAGTC 1 cut(s) 429
MnlI CCTC 6 cut(s) 23, 147, 293, 449, 517, 621
MroI TCCGGA 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 2 cut(s) 20, 265
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NdeII GATC 3 cut(s) 211, 587, 630
NlaIII CATG 5 cut(s) 65, 103, 329, 421, 554
NlaIV GGNNCC 1 cut(s) 632
OliI CACNNNNGTG 1 cut(s) 20
PagI TCATGA 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 5 cut(s) 29, 73, 146, 234, 347
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 2 cut(s) 142, 161
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Ppu21I YACGTR 1 cut(s) 296
Psp1406I AACGTT 2 cut(s) 124, 225
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 632
PspPI GGNCC 2 cut(s) 10, 254
PsuI RGATCY 1 cut(s) 630
RseI CAYNNNNRTG 2 cut(s) 20, 265
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 141, 160
Sau3AI GATC 3 cut(s) 211, 587, 630
Sau96I GGNCC 2 cut(s) 10, 254
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 1 cut(s) 78
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 2 cut(s) 20, 265
Sse9I AATT 5 cut(s) 52, 361, 369, 423, 623
SspMI CTAG 2 cut(s) 305, 344
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 3 cut(s) 127, 228, 298
TaqI TCGA 1 cut(s) 438
TasI AATT 5 cut(s) 52, 361, 369, 423, 623
TfiI GAWTC 5 cut(s) 29, 73, 146, 234, 347
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 646
TseI GCWGC 2 cut(s) 140, 159
TspDTI ATGAA 4 cut(s) 17, 88, 116, 342
TspRI CASTG 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 305, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.