RchiOBHm_Chr6g0256541

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
11749703 .. 11750202
500 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGATCACGTGGCCGCTCTCGGCGGAGCAGTTCTCGAATGAGAAGCTGATTACTGATTTGTTGGGGATTGGTGTTCAGGTTGGGAGCAAAGAGTGGGCGTCGTGGAATATGGAGAGGAAGGAGTTGATTGGGAGAGAGAAGGTGGAAGATGCGGTGAGGAGGGTGGTGGGTGGTGGAGATGAGGCGGTGGAGATGAGGAAGAGAGCCAGAGATCTTGCGGAGAAGGCCAAAAGAGCTGTTGAAGAAGGTGGGTCATCATATGCAGAAGTGGATGCTCTGATTTCAGAGCTCAAGTCACTGAAGGAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

5.33

Isoelectric Point (pI)

25.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 5 cut(s) 14, 23, 152, 185, 218
AcoI YGGCCR 1 cut(s) 11
AcvI CACGTG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 98
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 3 cut(s) 46, 236, 289
AluI AGCT 3 cut(s) 46, 236, 289
Alw21I GWGCWC 1 cut(s) 291
AoxI GGCC 2 cut(s) 11, 225
AsuHPI GGTGA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 291
BclI TGATCA 1 cut(s) 3
BglII AGATCT 1 cut(s) 211
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmsI GCATC 2 cut(s) 139, 262
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpuEI CTTGAG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 98
BseGI GGATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 172
BshFI GGCC 2 cut(s) 13, 227
BsiHKAI GWGCWC 1 cut(s) 291
BsnI GGCC 2 cut(s) 13, 227
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 3, 211
BspACI CCGC 5 cut(s) 14, 23, 152, 185, 218
BspANI GGCC 2 cut(s) 13, 227
BsrBI CCGCTC 1 cut(s) 16
BssMI GATC 2 cut(s) 3, 211
BssNI GRCGYC 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 9
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 2 cut(s) 6, 214
BstMBI GATC 2 cut(s) 3, 211
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 2 cut(s) 13, 227
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 296
CseI GACGC 1 cut(s) 87
CviJI RGCY 6 cut(s) 13, 46, 206, 227, 236, 289
CviKI_1 RGCY 6 cut(s) 13, 46, 206, 227, 236, 289
DpnI GATC 2 cut(s) 5, 213
DpnII GATC 2 cut(s) 3, 211
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco72I CACGTG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 291
FaiI YATR 3 cut(s) 110, 259, 261
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 13, 227
HgaI GACGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 98
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 279, 286
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 5 cut(s) 112, 133, 217, 239, 295
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 211
LmnI GCTCC 2 cut(s) 25, 84
LpnPI CCDG 2 cut(s) 62, 220
LweI GCATC 2 cut(s) 139, 262
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 294
MalI GATC 2 cut(s) 5, 213
MbiI CCGCTC 1 cut(s) 16
MboI GATC 2 cut(s) 3, 211
MboII GAAGA 3 cut(s) 158, 211, 254
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 310
MnlI CCTC 5 cut(s) 108, 150, 153, 175, 189
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 3, 211
NmuCI GTSAC 1 cut(s) 294
PkrI GCNGC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 291
PspCI CACGTG 1 cut(s) 9
PsuI RGATCY 1 cut(s) 211
SacI GAGCTC 1 cut(s) 291
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 2 cut(s) 3, 211
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 11, 48, 81, 144, 238, 250, 291
SfaNI GCATC 2 cut(s) 139, 262
SgeI CNNG 9 cut(s) 19, 21, 31, 46, 89, 114, 219, 227, 304
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 310
SsiI CCGC 5 cut(s) 14, 23, 152, 185, 218
SstI GAGCTC 1 cut(s) 291
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 35
TasI AATT 1 cut(s) 310
TauI GCSGC 1 cut(s) 16
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
TspRI CASTG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.