RchiOBHm_Chr6g0257001

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
12274459 .. 12284746
10288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGCAAAAATTGAAGTCATCTCACTCTCCTGAAGAATTCGAGGATGGGGATGCTAATATGGGGCAGATAGTAGTGGACCCTCTGCTTGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCGGGCTTAAATAGTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGGGATCATGTCCTCAGGTTTGTTCTTAATCTTGATACTTTTGCAGGTTGGGAAAGACATTGCAGTCAATCACATTACTTTATAGTTTATACCCTTCTTTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAGGCTGAGATAAAGAAGTGGGTCGGAGACAGAGTTTGCCTCATTGCTCTGTGTGAAAGTACCAGAGATGATGTTGTTTCTGGAATTGATCAGTTCACAAGTGCTCGCAGCCGTTTGCAGGTTCTAATTGTTTCTTACGAAACATTCCGAATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTCATATGTGATGAGGCTCACAGGCTAAAGAATGACCAAACGATACGAATAGGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

227

Amino Acids

25.82

Weight (kDa)

5.97

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 36 - 202 1.4e-20 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 261
Acc36I ACCTGC 2 cut(s) 233, 481
AciI CCGC 2 cut(s) 146, 642
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 433, 532
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 2 cut(s) 13, 125
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 1 cut(s) 210
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 161, 480, 625
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 148, 492, 612
BccI CCATC 2 cut(s) 38, 305
BceAI ACGGC 1 cut(s) 468
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 1 cut(s) 682
BfuAI ACCTGC 2 cut(s) 233, 481
BisI GCNGC 3 cut(s) 162, 481, 626
BlsI GCNGC 3 cut(s) 163, 482, 627
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 354
Bse21I CCTNAGG 1 cut(s) 212
Bse3DI GCAATG 2 cut(s) 256, 414
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 3 cut(s) 49, 55, 182
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 2 cut(s) 256, 414
BseMII CTCAG 2 cut(s) 226, 369
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 148, 492, 612
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 530
Bsp143I GATC 2 cut(s) 202, 460
BspACI CCGC 2 cut(s) 146, 642
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 225, 370
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 2 cut(s) 233, 481
BspPI GGATC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 256, 414
BsrGI TGTACA 1 cut(s) 530
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 202, 460
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 625
BstAUI TGTACA 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 148, 478, 640
BstDEI CTNAG 2 cut(s) 212, 378
BstF5I GGATG 3 cut(s) 49, 55, 182
BstKTI GATC 2 cut(s) 205, 463
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 202, 460
BstMWI GCNNNNNNNGC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 148, 492, 612
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 49, 55, 182
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 2 cut(s) 233, 481
Cac8I GCNNGC 3 cut(s) 148, 478, 640
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 432, 531
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 4 cut(s) 130, 173, 206, 635
CviJI RGCY 8 cut(s) 150, 335, 377, 483, 543, 581, 589, 625
CviKI_1 RGCY 8 cut(s) 150, 335, 377, 483, 543, 581, 589, 625
CviQI GTAC 2 cut(s) 432, 531
DdeI CTNAG 2 cut(s) 212, 378
DpnI GATC 2 cut(s) 204, 462
DpnII GATC 2 cut(s) 202, 460
DrdI GACNNNNNNGTC 1 cut(s) 261
DseDI GACNNNNNNGTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 133, 176, 209, 638
FatI CATG 4 cut(s) 129, 172, 205, 634
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 569
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 162, 481, 626
FokI GGATG 3 cut(s) 56, 62, 189
Fsp4HI GCNGC 3 cut(s) 162, 481, 626
FspBI CTAG 1 cut(s) 682
GluI GCNGC 3 cut(s) 162, 481, 626
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 4 cut(s) 133, 176, 209, 638
HinfI GANTC 1 cut(s) 551
Hpy166II GTNNAC 2 cut(s) 76, 468
Hpy188I TCNGA 2 cut(s) 398, 521
Hpy188III TCNNGA 4 cut(s) 29, 230, 453, 659
Hpy8I GTNNAC 2 cut(s) 76, 468
HpyAV CCTTC 4 cut(s) 107, 110, 302, 572
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 9 cut(s) 4, 164, 188, 242, 261, 490, 526, 638, 672
HpyF10VI GCNNNNNNNGC 1 cut(s) 625
HpyF3I CTNAG 2 cut(s) 212, 378
Hsp92II CATG 4 cut(s) 133, 176, 209, 638
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 2 cut(s) 202, 460
LpnPI CCDG 9 cut(s) 42, 199, 228, 367, 438, 448, 476, 571, 644
Lsp1109I GCAGC 3 cut(s) 148, 492, 612
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 682
MaeIII GTNAC 2 cut(s) 343, 557
MalI GATC 2 cut(s) 204, 462
MboI GATC 2 cut(s) 202, 460
MboII GAAGA 1 cut(s) 44
MfeI CAATTG 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 6 cut(s) 8, 35, 125, 367, 456, 498
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 7 cut(s) 34, 90, 221, 367, 422, 571, 638
Mph1103I ATGCAT 1 cut(s) 528
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 3 cut(s) 152, 225, 327
MunI CAATTG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 625
NdeI CATATG 1 cut(s) 569
NdeII GATC 2 cut(s) 202, 460
NlaIII CATG 4 cut(s) 133, 176, 209, 638
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 343, 557
NsiI ATGCAT 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PctI GAATGC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 3 cut(s) 163, 482, 627
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
RsaI GTAC 2 cut(s) 433, 532
RsaNI GTAC 2 cut(s) 432, 531
SaqAI TTAA 3 cut(s) 152, 225, 327
SatI GCNGC 3 cut(s) 162, 481, 626
Sau3AI GATC 2 cut(s) 202, 460
Sau96I GGNCC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 478
SetI ASST 5 cut(s) 218, 247, 495, 564, 683
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 76
Sse9I AATT 6 cut(s) 8, 35, 125, 367, 456, 498
SsiI CCGC 2 cut(s) 146, 642
SspMI CTAG 1 cut(s) 682
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 39, 100
TasI AATT 6 cut(s) 8, 35, 125, 367, 456, 498
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 3 cut(s) 152, 225, 327
Tru9I TTAA 3 cut(s) 152, 225, 327
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 2 cut(s) 343, 557
TseI GCWGC 3 cut(s) 161, 480, 625
Tsp45I GTSAC 2 cut(s) 343, 557
TspDTI ATGAA 2 cut(s) 118, 623
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 682
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.