RchiOBHm_Chr6g0257291

V-type proton ATPase catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
12576923 .. 12580671
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 144 bp
ATGGATGATCAAAACATCAATTATAGAATAATTGAGCACCGTATGGGAGATCTCTTTTACCGTCTAATGTCTAAAAATTTGAGGAACCTGCTGAAGGCGAACAAGCTCTTGTGGCAAAATTTAAGAAGCTACACAATTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0002020 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N ATP-synt_ab_Xtn

Protein Analysis

47

Amino Acids

5.81

Weight (kDa)

9.99

Isoelectric Point (pI)

60.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 76, 118
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 106, 129
AluI AGCT 2 cut(s) 106, 129
Alw21I GWGCWC 1 cut(s) 39
ApoI RAATTY 2 cut(s) 76, 118
Bbv12I GWGCWC 1 cut(s) 39
BclI TGATCA 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 7, 49
BspLI GGNNCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 96
BssMI GATC 2 cut(s) 7, 49
Bst4CI ACNGT 2 cut(s) 41, 62
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 10, 52
BstMBI GATC 2 cut(s) 7, 49
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 96
CviJI RGCY 2 cut(s) 106, 129
CviKI_1 RGCY 2 cut(s) 106, 129
DpnI GATC 2 cut(s) 9, 51
DpnII GATC 2 cut(s) 7, 49
Eco57I CTGAAG 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 92
FaiI YATR 2 cut(s) 24, 44
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 17
FspEI CC 8 cut(s) 29, 30, 53, 67, 74, 80, 97, 101
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 41, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 49
LpnPI CCDG 1 cut(s) 101
MalI GATC 2 cut(s) 9, 51
MboI GATC 2 cut(s) 7, 49
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 5 cut(s) 19, 30, 76, 118, 135
MnlI CCTC 1 cut(s) 75
MseI TTAA 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 2 cut(s) 7, 49
NlaIV GGNNCC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 2 cut(s) 7, 49
SduI GDGCHC 1 cut(s) 39
SetI ASST 4 cut(s) 90, 108, 131, 143
SgeI CNNG 3 cut(s) 100, 115, 121
Sse9I AATT 5 cut(s) 19, 30, 76, 118, 135
TaaI ACNGT 2 cut(s) 41, 62
TasI AATT 5 cut(s) 19, 30, 76, 118, 135
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 2 cut(s) 76, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.