RchiOBHm_Chr6g0257351

Beta-L-arabinofuranosidase, GH127

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
12655592 .. 12656773
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGTCACCTGTGTTTGTGATTTTTTTGGTATGTGAATGTGGATATGGTTTGGCAGAGGGTAAGGAGTGTACAAACCAGGTTTTTCCCTGGATGGCATCACATACTTCTCGCTTTACGCTTTTATCTTCCAATAATGAAACTTTGAAGAATGAGACAGCTGGTTTAGAAACCCCTGGTGCACCATATGATGCCAAAGATTCGTGGGAGGCATCAATTAGTGAACTGCGTGGTCATTTTGTAGGGCATTATTTGAGTGCTTCAGCGATGATGTGGGCAAGCACTCATAATGATACTCTCAAAGAGAAGATGTCCGGGATTGTGTCAAGTCTTTCTCTTTGTCAGAAGAAAATTGGCAGTGGATATCTTTCGGCTTTTCCAACTGCGGAATTTGATCGCTTTGAAGATTATAAACATGTCTGGGCTCCATATATATTATACCATTCACAAGGTCAATTTAATTGGTTTGCTTCACTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AbfB Glyco_hydro_127

Protein Analysis

159

Amino Acids

17.81

Weight (kDa)

5.46

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-AFase-like_GH127_cat PF07944 34 - 146 4.9e-20 Beta-L-arabinofuranosidase, GH127 catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AciI CCGC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 2 cut(s) 145, 401
AjnI CCWGG 3 cut(s) 75, 86, 172
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 181
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 3 cut(s) 77, 88, 174
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 473
Bme1390I CCNGG 4 cut(s) 77, 88, 174, 313
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 4 cut(s) 77, 88, 174, 313
BmsI GCATC 3 cut(s) 104, 178, 218
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 86, 172
BseBI CCWGG 3 cut(s) 77, 88, 174
BseDI CCNNGG 2 cut(s) 86, 172
BseGI GGATG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 181, 424
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 86, 172
BssMI GATC 1 cut(s) 391
Bst2UI CCWGG 3 cut(s) 77, 88, 174
BstAUI TGTACA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 391
BstNI CCWGG 3 cut(s) 77, 88, 174
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 4 cut(s) 75, 86, 172, 311
BstSLI GKGCMC 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 69
CviAII CATG 1 cut(s) 413
CviJI RGCY 3 cut(s) 158, 371, 422
CviKI_1 RGCY 3 cut(s) 158, 371, 422
CviQI GTAC 1 cut(s) 69
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 3 cut(s) 75, 86, 172
EcoRV GATATC 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 424
FaeI CATG 1 cut(s) 416
FatI CATG 1 cut(s) 412
FauNDI CATATG 1 cut(s) 184
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 424
FspBI CTAG 1 cut(s) 473
HapII CCGG 1 cut(s) 312
Hin1II CATG 1 cut(s) 416
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 3 cut(s) 69, 179, 221
Hpy188I TCNGA 1 cut(s) 342
Hpy8I GTNNAC 3 cut(s) 69, 179, 221
HpyCH4V TGCA 1 cut(s) 179
Hsp92II CATG 1 cut(s) 416
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 427
LweI GCATC 3 cut(s) 104, 178, 218
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 5 cut(s) 117, 157, 316, 355, 413
MhlI GDGCHC 2 cut(s) 181, 424
MluCI AATT 5 cut(s) 213, 348, 386, 452, 457
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 2 cut(s) 49, 199
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 4 cut(s) 77, 88, 174, 313
MvaI CCWGG 3 cut(s) 77, 88, 174
NciI CCSGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 184
NdeII GATC 1 cut(s) 391
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 416
PciI ACATGT 1 cut(s) 412
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 311
PscI ACATGT 1 cut(s) 412
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 75, 86, 172
PspGI CCWGG 3 cut(s) 75, 86, 172
PspN4I GGNNCC 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 1 cut(s) 391
ScrFI CCNGG 4 cut(s) 77, 88, 174, 313
SduI GDGCHC 2 cut(s) 181, 424
SetI ASST 4 cut(s) 10, 81, 160, 451
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 3 cut(s) 104, 178, 218
Sse9I AATT 5 cut(s) 213, 348, 386, 452, 457
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 4 cut(s) 75, 86, 172, 311
TasI AATT 5 cut(s) 213, 348, 386, 452, 457
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 177
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 416
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.