RchiOBHm_Chr6g0257551

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
12903026 .. 12903404
379 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGATCTCCCACGGAGAAGCAGAAAGTGAGATAGTACTAGGGAAAGAGCAAAACAGATATTCAAACAGCGATGATAACAACGAAGAAACAGAATATCTTAGTCAACGAGAGTGGCTGAACCTGAGCCTAGGTGGGAATTTGCTCTCAACAGAAGGAGACACCGACTCACAGTCAAGACCAGCTTCAGGTAAGGTTTTCTCCTGTAACTTCTGA

Protein Analysis

70

Amino Acids

7.79

Weight (kDa)

4.28

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 63
AhdI GACNNNNNGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 136
AspA2I CCTAGG 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 38, 128
BlnI CCTAGG 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 10, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 10, 127
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 10, 127
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 98, 122
BstDSI CCRYGG 1 cut(s) 10
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 3
BtgI CCRYGG 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 84
Csp6I GTAC 1 cut(s) 35
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviJI RGCY 3 cut(s) 115, 126, 182
CviKI_1 RGCY 3 cut(s) 115, 126, 182
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 2 cut(s) 98, 122
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DriI GACNNNNNGTC 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FspBI CTAG 2 cut(s) 38, 128
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 98, 122
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 134, 171, 192
MaeI CTAG 2 cut(s) 38, 128
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 95
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 158
NdeII GATC 1 cut(s) 3
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 158
SetI ASST 5 cut(s) 123, 133, 184, 190, 195
SgeI CNNG 8 cut(s) 23, 50, 119, 133, 140, 186, 191, 198
Sse9I AATT 1 cut(s) 136
SspMI CTAG 2 cut(s) 38, 128
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 171
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 27
XapI RAATTY 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 127
XspI CTAG 2 cut(s) 38, 128
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.