RchiOBHm_Chr6g0258481

Rab subfamily of small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
13776580 .. 13778284
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGACATGACCACATGTGATTATTCCTACTCGGCTACTCTCTGCGAATGCGACTCAGCTCTCTGGGTCTTCCACTCTTCCTCACCTCTGCGGACTGCGGCTCTGCCTCTCAGCTCTCAGCTCTCAGCTCTCACAATCGGTGGTCTTGATTGGCGACTCCGGCGTCGGCAAGTCCAATCTCCTCTCCAGGTTCACCAAGAACGAGTTCAACCGCGAGTCCAAGTCCACCATTGCTGTCGAGTTCGCTGGCCAAATCGGTCATCAAGGCCCAGATTTAGGACACTGCTGGCCAAGAAAGGGAAAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

103

Amino Acids

11.91

Weight (kDa)

10.55

Isoelectric Point (pI)

77.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccII CGCG 1 cut(s) 214
AciI CCGC 3 cut(s) 91, 98, 212
AcoI YGGCCR 2 cut(s) 248, 288
AcsI RAATTY 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 276, 297
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 59, 114, 121, 128
AluI AGCT 4 cut(s) 59, 114, 121, 128
AoxI GGCC 3 cut(s) 248, 266, 288
ApoI RAATTY 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 75, 185
BalI TGGCCA 2 cut(s) 250, 290
BbsI GAAGAC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 188
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 297
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 276, 297
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 4 cut(s) 69, 124, 131, 138
BseRI GAGGAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 250, 268, 290
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 276, 297
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 3 cut(s) 250, 268, 290
BspACI CCGC 3 cut(s) 91, 98, 212
BspANI GGCC 3 cut(s) 250, 268, 290
BspCNI CTCAG 4 cut(s) 68, 123, 130, 137
BspFNI CGCG 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 248, 288
BstDEI CTNAG 4 cut(s) 55, 110, 117, 124
BstFNI CGCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 3 cut(s) 250, 268, 290
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 248, 288
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 1 cut(s) 152
CviAII CATG 2 cut(s) 7, 15
CviJI RGCY 9 cut(s) 35, 59, 101, 114, 121, 128, 250, 268, 290
CviKI_1 RGCY 9 cut(s) 35, 59, 101, 114, 121, 128, 250, 268, 290
DdeI CTNAG 4 cut(s) 55, 110, 117, 124
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
EaeI YGGCCR 2 cut(s) 248, 288
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 10, 18
FaiI YATR 2 cut(s) 8, 16
FatI CATG 2 cut(s) 6, 14
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 250, 268, 290
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 2 cut(s) 10, 18
HinfI GANTC 3 cut(s) 53, 156, 216
HpaII CCGG 1 cut(s) 160
HphI GGTGA 2 cut(s) 75, 185
Hpy166II GTNNAC 2 cut(s) 193, 226
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 193, 226
Hpy99I CGWCG 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 4 cut(s) 55, 110, 117, 124
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 2 cut(s) 10, 18
LpnPI CCDG 7 cut(s) 49, 173, 173, 200, 232, 272, 283
MboII GAAGA 2 cut(s) 61, 69
MlsI TGGCCA 2 cut(s) 250, 290
MluCI AATT 1 cut(s) 306
MluNI TGGCCA 2 cut(s) 250, 290
MlyI GAGTC 3 cut(s) 47, 150, 225
MnlI CCTC 4 cut(s) 91, 96, 117, 192
Mox20I TGGCCA 2 cut(s) 250, 290
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 2 cut(s) 250, 290
Msp20I TGGCCA 2 cut(s) 250, 290
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 10, 18
NmeAIII GCCGAG 1 cut(s) 11
NspI RCATGY 1 cut(s) 18
PciI ACATGT 1 cut(s) 14
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 3 cut(s) 47, 150, 224
PpsI GAGTC 3 cut(s) 47, 150, 224
PscI ACATGT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspPI GGNCC 1 cut(s) 267
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 3 cut(s) 47, 150, 225
ScrFI CCNGG 1 cut(s) 188
SetI ASST 6 cut(s) 61, 88, 116, 123, 130, 192
Sse9I AATT 1 cut(s) 306
SsiI CCGC 3 cut(s) 91, 98, 212
StyD4I CCNGG 1 cut(s) 186
TaqI TCGA 1 cut(s) 238
TaqII GACCGA 1 cut(s) 246
TasI AATT 1 cut(s) 306
TauI GCSGC 1 cut(s) 101
TscAI CASTG 1 cut(s) 288
TspRI CASTG 1 cut(s) 288
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.