RchiOBHm_Chr6g0258561

Chromosome-associated kinesin

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
13893287 .. 13894259
973 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 168 bp
ATGCTACTTCAGAGTACACCAGTTCAGAAGGCTGCTGAAACAGAAGGGAATTTTGGAGCAAGAAAGAAACCGTTGACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCACAAAAAAAGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

5.89

Weight (kDa)

9.99

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 16, 103
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 32, 110
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 109
BbvI GCAGC 2 cut(s) 19, 97
BciT130I CCWGG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 33, 111
BlsI GCNGC 2 cut(s) 34, 112
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 19, 97
BshFI GGCC 1 cut(s) 123
BsnI GGCC 1 cut(s) 123
BspANI GGCC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 72, 165
BstC8I GCNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 19, 97
BsuRI GGCC 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 15, 102
CviJI RGCY 4 cut(s) 32, 123, 144, 156
CviKI_1 RGCY 4 cut(s) 32, 123, 144, 156
CviQI GTAC 2 cut(s) 15, 102
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 33, 111
Fsp4HI GCNGC 2 cut(s) 33, 111
GluI GCNGC 2 cut(s) 33, 111
HaeIII GGCC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 17, 75
Hpy188I TCNGA 2 cut(s) 12, 27
Hpy8I GTNNAC 2 cut(s) 17, 75
HpyAV CCTTC 2 cut(s) 22, 38
HpyCH4III ACNGT 2 cut(s) 72, 165
HpyCH4V TGCA 1 cut(s) 113
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 33, 105, 132, 158
Lsp1109I GCAGC 2 cut(s) 19, 97
MaeIII GTNAC 1 cut(s) 159
MluCI AATT 2 cut(s) 49, 81
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 34, 112
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 16, 103
RsaNI GTAC 2 cut(s) 15, 102
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 2 cut(s) 33, 111
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 120
SetI ASST 2 cut(s) 121, 158
SfcI CTRYAG 1 cut(s) 164
SgeI CNNG 5 cut(s) 32, 72, 131, 132, 157
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 2 cut(s) 49, 81
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 72, 165
TasI AATT 2 cut(s) 49, 81
TatI WGTACW 2 cut(s) 14, 101
TfiI GAWTC 1 cut(s) 150
TseI GCWGC 2 cut(s) 32, 110
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.