RchiOBHm_Chr6g0259861

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
15043726 .. 15044036
311 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGACTCAACCACCAGGGTTCATTGATCCATCTCGCCCATCTCATGTTTGCAAGCTCAACAAGGCCCTTTATGGTCTCAAGCAAGCACCACATGCTTGGTTTCATCGCATGACCTCTTTCTTATTGTCGGTTGGCTTTGTTCAAAGTTTGGCAGATTCTTCCCTTTTCATTTTTCGTCATGGAGTCCACATGGCCACACGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.62

Weight (kDa)

10.44

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 60 3.9e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 192
AcvI CACGTG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 20
AoxI GGCC 2 cut(s) 63, 192
AspS9I GGNCC 1 cut(s) 64
BalI TGGCCA 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 200
BccI CCATC 2 cut(s) 37, 46
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 14
BshFI GGCC 2 cut(s) 65, 194
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 65, 194
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 2 cut(s) 65, 194
BspPI GGATC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 53, 84
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 65, 194
BtgZI GCGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 53, 84
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 5 cut(s) 44, 92, 109, 179, 190
CviJI RGCY 4 cut(s) 55, 65, 135, 194
CviKI_1 RGCY 4 cut(s) 55, 65, 135, 194
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 80
Eco72I CACGTG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 5 cut(s) 47, 95, 112, 182, 193
FaiI YATR 6 cut(s) 45, 72, 93, 110, 180, 191
FatI CATG 5 cut(s) 43, 91, 108, 178, 189
HaeIII GGCC 2 cut(s) 65, 194
Hin1II CATG 5 cut(s) 47, 95, 112, 182, 193
HinfI GANTC 3 cut(s) 4, 155, 183
Hpy166II GTNNAC 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 5 cut(s) 47, 95, 112, 182, 193
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 27
MaeII ACGT 1 cut(s) 199
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 25
NlaIII CATG 5 cut(s) 47, 95, 112, 182, 193
NspI RCATGY 1 cut(s) 95
PfeI GAWTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 191
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 13
PspCI CACGTG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 13
PspPI GGNCC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 15
SetI ASST 3 cut(s) 57, 116, 202
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 13
TaiI ACGT 1 cut(s) 202
TfiI GAWTC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 10, 92, 157
XceI RCATGY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.