RchiOBHm_Chr6g0260321

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
15358758 .. 15362047
3290 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGATGGAGTTTAGCAACTGGATCAAAGGTTTTTCTATAAGCCTTGCTTTTGGTACAATCATGAATGCTGAAGTCTGGGGTTTATTCAATGGACTTTTACTCCAGCTTAGTCAATCTGCAAAGAGCCTATTCTGTGACACTAGCTGGAACATCTCATGTCTAGCTACAAGGAAGTTAATGAAACAGCAGATAACTTGCCAAGCTCGATCATCCTTAGCCATTTGGAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.73

Weight (kDa)

9.06

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 4 cut(s) 106, 144, 164, 203
AluI AGCT 4 cut(s) 106, 144, 164, 203
AlwI GGATC 1 cut(s) 29
BfaI CTAG 2 cut(s) 141, 161
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 21, 206
BspHI TCATGA 1 cut(s) 60
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 23
BssMI GATC 2 cut(s) 21, 206
BstDEI CTNAG 2 cut(s) 107, 214
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 2 cut(s) 24, 209
BstMBI GATC 2 cut(s) 21, 206
BtsCI GGATG 1 cut(s) 209
CciI TCATGA 1 cut(s) 60
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 61, 156
CviJI RGCY 7 cut(s) 42, 106, 126, 144, 164, 203, 218
CviKI_1 RGCY 7 cut(s) 42, 106, 126, 144, 164, 203, 218
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 107, 214
DpnI GATC 2 cut(s) 23, 208
DpnII GATC 2 cut(s) 21, 206
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 2 cut(s) 64, 159
FaiI YATR 3 cut(s) 38, 62, 157
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FatI CATG 2 cut(s) 60, 155
FokI GGATG 1 cut(s) 196
FspBI CTAG 2 cut(s) 141, 161
GsuI CTGGAG 1 cut(s) 86
Hin1II CATG 2 cut(s) 64, 159
Hpy188III TCNNGA 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 107, 214
Hsp92II CATG 2 cut(s) 64, 159
Kzo9I GATC 2 cut(s) 21, 206
LpnPI CCDG 4 cut(s) 4, 61, 116, 130
MaeI CTAG 2 cut(s) 141, 161
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 23, 208
MboI GATC 2 cut(s) 21, 206
MseI TTAA 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 70
NdeII GATC 2 cut(s) 21, 206
NlaIII CATG 2 cut(s) 64, 159
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 1 cut(s) 60
PctI GAATGC 1 cut(s) 70
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 2 cut(s) 21, 206
SetI ASST 5 cut(s) 31, 108, 146, 166, 205
SspMI CTAG 2 cut(s) 141, 161
TaqI TCGA 1 cut(s) 205
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 77, 194
XspI CTAG 2 cut(s) 141, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.