RchiOBHm_Chr6g0260451

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
15432136 .. 15432309
174 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGAAGCGTATAACGAACATACCCTGTCTCTACATTGGATCAAGAACAGGATCAGAGGGATCAAAAACGGCTAATTCGTATAGAGCCATTGAACCGGCCCAACCAGCAATCAGAGCTGTATGCATTATATGGACAGAAATCAAACGACCGGGATCATTCAATACGACGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.27

Weight (kDa)

9.89

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030311)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260451 RchiOBHm_Chr7g0228831

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 46, 58, 67, 160
AgsI TTSAA 2 cut(s) 92, 160
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 46, 58, 67, 160
AoxI GGCC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 150
BceAI ACGGC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 95, 149
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 4 cut(s) 38, 50, 59, 152
BspANI GGCC 1 cut(s) 98
BspPI GGATC 4 cut(s) 46, 58, 67, 160
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 4 cut(s) 38, 50, 59, 152
Bst4CI ACNGT 1 cut(s) 169
BstKTI GATC 4 cut(s) 41, 53, 62, 155
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 4 cut(s) 38, 50, 59, 152
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstSCI CCNGG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 97
CviJI RGCY 4 cut(s) 71, 86, 98, 116
CviKI_1 RGCY 4 cut(s) 71, 86, 98, 116
DpnI GATC 4 cut(s) 40, 52, 61, 154
DpnII GATC 4 cut(s) 38, 50, 59, 152
EcoT22I ATGCAT 1 cut(s) 125
FaiI YATR 7 cut(s) 11, 20, 81, 121, 128, 130, 172
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 95, 149
HpaII CCGG 2 cut(s) 95, 149
Hpy188I TCNGA 2 cut(s) 55, 113
Hpy188III TCNNGA 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
Kzo9I GATC 4 cut(s) 38, 50, 59, 152
LpnPI CCDG 5 cut(s) 33, 37, 108, 117, 162
MalI GATC 4 cut(s) 40, 52, 61, 154
MboI GATC 4 cut(s) 38, 50, 59, 152
MluCI AATT 1 cut(s) 73
MnlI CCTC 1 cut(s) 49
Mph1103I ATGCAT 1 cut(s) 125
MspI CCGG 2 cut(s) 95, 149
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NciI CCSGG 1 cut(s) 150
NdeII GATC 4 cut(s) 38, 50, 59, 152
NsiI ATGCAT 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PspPI GGNCC 1 cut(s) 97
Sau3AI GATC 4 cut(s) 38, 50, 59, 152
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 150
SetI ASST 1 cut(s) 118
SgeI CNNG 7 cut(s) 36, 54, 60, 107, 116, 161, 162
Sse9I AATT 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.