RchiOBHm_Chr6g0260851

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
15794182 .. 15797030
2849 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGTGTAGAAAAAAACAATTGCAAATTTTTTCTTGCGCTTGCTGGAGTACCAAAGAGAGTTGTAGGAATTCTGCAGGAACATATATTTTCATTTTTTCTAAAAATCATATCTTCTACGATTTTCAGATGTTAAATATGGCGTTGATAAAGAGGTTGGTGTCCAATGATGTGTTGGATTTTGTTGCCTCTGATGCTCGACCTGTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATACATGAATTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTCAGACTAAAAGGAGGGGATCCATTGGTGTTTAGAAGGGGTGGAGAGGAGACGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCAGTTTGGTGGTCTTGTTTTGTGTACTTTTTGGTTGATGGAGTTTGTATTACTGCTGCTTCTAGGATAGCAGCAGAGCTGGGGATCCCATTAACGCACAGAGGTGTTGCAAATAGTGTAAGATTTCTGACCGGGCACTCCAGAAGGGAGGAACAGATCCGCTTTATTCATGTTACTTTGTTACTTTCACCTAGTACAGGAAAAAAAATGGAGAACTTGAATAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

205

Amino Acids

23.16

Weight (kDa)

9.1

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 52 - 130 3.2e-11 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 225
AciI CCGC 1 cut(s) 547
AclWI GGATC 5 cut(s) 308, 321, 466, 479, 538
AcsI RAATTY 3 cut(s) 24, 67, 369
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 4 cut(s) 49, 227, 413, 583
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 2 cut(s) 374, 607
AjnI CCWGG 1 cut(s) 240
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 3 cut(s) 281, 287, 466
AluI AGCT 3 cut(s) 281, 287, 466
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 5 cut(s) 308, 321, 466, 479, 538
ApeKI GCWGC 2 cut(s) 443, 458
ApoI RAATTY 3 cut(s) 24, 67, 369
ArsI GACNNNNNNTTYG 2 cut(s) 337, 369
Asp718I GGTACC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 525
BamHI GGATCC 2 cut(s) 313, 471
BanI GGYRCC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 430, 470
BccI CCATC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 450, 579
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 444, 459
BlsI GCNGC 2 cut(s) 445, 460
Bme1390I CCNGG 2 cut(s) 242, 520
BmiI GGNNCC 3 cut(s) 227, 315, 473
BmrFI CCNGG 2 cut(s) 242, 520
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 3 cut(s) 64, 303, 511
BpuMI CCSGG 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 2 cut(s) 260, 356
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 430, 470
BseYI CCCAGC 2 cut(s) 221, 466
BshNI GGYRCC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 313, 471, 543
BspACI CCGC 1 cut(s) 547
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 227, 315, 473
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 5 cut(s) 308, 321, 466, 479, 538
BspT107I GGYRCC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 313, 471, 543
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 582
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 316, 474, 546
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 313, 471, 543
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 240, 518
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 430, 470
BstX2I RGATCY 3 cut(s) 313, 471, 543
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 3 cut(s) 313, 471, 543
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 1 cut(s) 38
Csp6I GTAC 4 cut(s) 48, 226, 412, 582
CviAII CATG 2 cut(s) 254, 557
CviJI RGCY 3 cut(s) 281, 287, 466
CviKI_1 RGCY 3 cut(s) 281, 287, 466
CviQI GTAC 4 cut(s) 48, 226, 412, 582
DdeI CTNAG 1 cut(s) 266
DpnI GATC 3 cut(s) 315, 473, 545
DpnII GATC 3 cut(s) 313, 471, 543
Eco57I CTGAAG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoRI GAATTC 2 cut(s) 67, 369
EcoRII CCWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 257, 560
FaiI YATR 8 cut(s) 82, 84, 108, 137, 207, 231, 255, 558
FatI CATG 2 cut(s) 253, 556
Fnu4HI GCNGC 2 cut(s) 444, 459
Fsp4HI GCNGC 2 cut(s) 444, 459
FspBI CTAG 2 cut(s) 450, 579
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 444, 459
GsaI CCCAGC 2 cut(s) 225, 470
GsuI CTGGAG 3 cut(s) 64, 303, 511
HapII CCGG 1 cut(s) 519
HhaI GCGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 257, 560
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 519
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 4 cut(s) 126, 190, 299, 516
Hpy188III TCNNGA 1 cut(s) 528
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 324, 525
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 22, 74, 358, 379, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 2 cut(s) 257, 560
HspAI GCGC 1 cut(s) 36
KpnI GGTACC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 313, 471, 543
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 2 cut(s) 430, 470
LweI GCATC 1 cut(s) 181
MaeI CTAG 2 cut(s) 450, 579
MaeIII GTNAC 2 cut(s) 559, 567
MalI GATC 3 cut(s) 315, 473, 545
MboI GATC 3 cut(s) 313, 471, 543
MboII GAAGA 1 cut(s) 103
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 3 cut(s) 313, 471, 543
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 5 cut(s) 17, 24, 67, 257, 369
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 7 cut(s) 144, 196, 238, 302, 334, 482, 529
MseI TTAA 2 cut(s) 131, 479
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 242, 520
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 520
NdeII GATC 3 cut(s) 313, 471, 543
NlaIII CATG 2 cut(s) 257, 560
NlaIV GGNNCC 3 cut(s) 227, 315, 473
OliI CACNNNNGTG 1 cut(s) 489
PkrI GCNGC 2 cut(s) 445, 460
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 2 cut(s) 221, 466
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 227, 315, 473
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 3 cut(s) 313, 471, 543
RsaI GTAC 4 cut(s) 49, 227, 413, 583
RsaNI GTAC 4 cut(s) 48, 226, 412, 582
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 2 cut(s) 131, 479
SatI GCNGC 2 cut(s) 444, 459
Sau3AI GATC 3 cut(s) 313, 471, 543
ScrFI CCNGG 2 cut(s) 242, 520
SduI GDGCHC 1 cut(s) 525
SetI ASST 7 cut(s) 155, 202, 283, 289, 468, 493, 580
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 5 cut(s) 17, 24, 67, 257, 369
SsiI CCGC 1 cut(s) 547
SspMI CTAG 2 cut(s) 450, 579
StyD4I CCNGG 2 cut(s) 240, 518
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 196
TasI AATT 5 cut(s) 17, 24, 67, 257, 369
TatI WGTACW 2 cut(s) 411, 581
Tru1I TTAA 2 cut(s) 131, 479
Tru9I TTAA 2 cut(s) 131, 479
TseI GCWGC 2 cut(s) 443, 458
TspDTI ATGAA 3 cut(s) 79, 270, 545
TspGWI ACGGA 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 3 cut(s) 24, 67, 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 2 cut(s) 450, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.