RchiOBHm_Chr6g0261031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
16003485 .. 16005447
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGCCCCACAAACTCCTCCGGATTCTCGAAAATCTTCGGATCCTTTGTGGCGAAGGGCTGATATCCGAAGATCATTTCCCCCTTTTTGATCTCAAATGCTGCATCATGGCTATGGACCATGATATCCTCCTTGGCCTTCCCGTACTGGAACGGAACCGGAGGTTCAATCCTCAAAGCCTCATAAACCACGGACTTGGTCAAATTCATCTTATCCAACGCCGAGAAAGTAACATTCCCATCGTTTTCTTTAACAAAGGCCCTGATTTCATTTCGGAGCTGGCGGTGCAAATCCTCTCCTGCGGATCCAACCCACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.08

Weight (kDa)

6.17

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 2 cut(s) 281, 300
AclWI GGATC 4 cut(s) 34, 47, 297, 310
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AlwI GGATC 4 cut(s) 34, 47, 297, 310
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 2 cut(s) 133, 256
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 115, 257
AvaII GGWCC 1 cut(s) 115
BamHI GGATCC 2 cut(s) 39, 302
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 245
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 257
BmiI GGNNCC 3 cut(s) 41, 155, 304
BmsI GCATC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 130, 187
BsaWI WCCGGW 2 cut(s) 18, 156
Bse1I ACTGG 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 130, 187
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 135, 258
BsiSI CCGG 2 cut(s) 19, 157
BsnI GGCC 2 cut(s) 135, 258
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 4 cut(s) 39, 70, 88, 302
BspACI CCGC 2 cut(s) 281, 300
BspANI GGCC 2 cut(s) 135, 258
BspEI TCCGGA 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 41, 155, 304
BspPI GGATC 4 cut(s) 34, 47, 297, 310
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 130, 187
BssMI GATC 4 cut(s) 39, 70, 88, 302
BssT1I CCWWGG 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 187
BstKTI GATC 4 cut(s) 42, 73, 91, 305
BstMBI GATC 4 cut(s) 39, 70, 88, 302
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 39, 302
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 2 cut(s) 39, 302
BsuRI GGCC 2 cut(s) 135, 258
BtgI CCRYGG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 115, 257
Csp6I GTAC 1 cut(s) 143
CviAII CATG 2 cut(s) 106, 119
CviJI RGCY 6 cut(s) 58, 110, 135, 177, 258, 277
CviKI_1 RGCY 6 cut(s) 58, 110, 135, 177, 258, 277
CviQI GTAC 1 cut(s) 143
DpnI GATC 4 cut(s) 41, 72, 90, 304
DpnII GATC 4 cut(s) 39, 70, 88, 302
Eco130I CCWWGG 1 cut(s) 130
Eco32I GATATC 2 cut(s) 63, 124
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 257
EcoRV GATATC 2 cut(s) 63, 124
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 109, 122
FaiI YATR 4 cut(s) 107, 113, 120, 182
FatI CATG 2 cut(s) 105, 118
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 2 cut(s) 135, 258
HapII CCGG 2 cut(s) 19, 157
Hin1II CATG 2 cut(s) 109, 122
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 19, 157
Hpy188I TCNGA 3 cut(s) 39, 67, 274
Hpy188III TCNNGA 2 cut(s) 19, 26
HpyAV CCTTC 2 cut(s) 47, 146
HpyCH4V TGCA 2 cut(s) 102, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
Hsp92II CATG 2 cut(s) 109, 122
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 39, 70, 88, 302
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 32, 131, 170, 263, 273, 310
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 227
MalI GATC 4 cut(s) 41, 72, 90, 304
MboI GATC 4 cut(s) 39, 70, 88, 302
MboII GAAGA 2 cut(s) 26, 80
MflI RGATCY 2 cut(s) 39, 302
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 6 cut(s) 26, 137, 153, 180, 188, 302
MroI TCCGGA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 2 cut(s) 249, 319
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 2 cut(s) 19, 157
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 4 cut(s) 39, 70, 88, 302
NlaIII CATG 2 cut(s) 109, 122
NlaIV GGNNCC 3 cut(s) 41, 155, 304
NmeAIII GCCGAG 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 41, 155, 304
PspPI GGNCC 2 cut(s) 115, 257
PsuI RGATCY 2 cut(s) 39, 302
PsyI GACNNNGTC 1 cut(s) 195
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 249, 319
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 4 cut(s) 39, 70, 88, 302
Sau96I GGNCC 2 cut(s) 115, 257
SetI ASST 2 cut(s) 164, 279
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 281, 300
StyI CCWWGG 1 cut(s) 130
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 249, 319
Tru9I TTAA 2 cut(s) 249, 319
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 194, 256
TspGWI ACGGA 2 cut(s) 166, 204
Tth111I GACNNNGTC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.