RchiOBHm_Chr6g0262201

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
16893930 .. 16895801
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGAAGAAAGGAGGACTTCGAGTCTTGCTTTTCAAGTTGTGTAACCAAGTATGCCTTGGTGGTCTTCTGCCTGGTCTTGGTTGTCCACCTCTTGTGACTGAAGGTATGGCCTCGGGTTTCTTTCGTCTGATGTTGGGCATCCAAGCTCCCTTGTTGGGTGAAACAAATAGTTTGGCCTTGGGCTTCCTTCGCTTGATGTTAGGCCTCCATGCTCCTTTGTTGGGTGAAACTAATGGAGATCCTGGGTCAGATAAGAAGAGTTCACTAGACTCTGCAGCACTTGCCATGCTTTTTGATCTCAAAACCCAGGTAAGGTTATCATTGGTGGATTATAATAGTATCTACCATGCTGCCTACTCTTGTATTAGCATGATATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

126

Amino Acids

13.43

Weight (kDa)

8.4

Isoelectric Point (pI)

20.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 4 cut(s) 77, 155, 221, 312
AgsI TTSAA 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 20
AjnI CCWGG 3 cut(s) 70, 241, 306
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 3 cut(s) 108, 174, 202
ApeKI GCWGC 2 cut(s) 275, 350
AsuHPI GGTGA 2 cut(s) 170, 236
AvaI CYCGRG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 287, 337
BciT130I CCWGG 3 cut(s) 72, 243, 308
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 276, 351
BlsI GCNGC 2 cut(s) 277, 352
Bme1390I CCNGG 3 cut(s) 72, 243, 308
BmeRI GACNNNNNGTC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 112
BmrFI CCNGG 3 cut(s) 72, 243, 308
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 56
BsaJI CCNNGG 5 cut(s) 55, 111, 177, 242, 306
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 155, 221, 312
BseBI CCWGG 3 cut(s) 72, 243, 308
BseDI CCNNGG 5 cut(s) 55, 111, 177, 242, 306
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 77, 155, 221, 312
BseXI GCAGC 2 cut(s) 287, 337
BshFI GGCC 3 cut(s) 110, 176, 204
BsiHKCI CYCGRG 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 77, 155, 221, 312
BsnI GGCC 3 cut(s) 110, 176, 204
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 2 cut(s) 238, 295
BspANI GGCC 3 cut(s) 110, 176, 204
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 55, 111, 177, 242, 306
BssMI GATC 2 cut(s) 238, 295
BssT1I CCWWGG 2 cut(s) 55, 177
Bst2UI CCWGG 3 cut(s) 72, 243, 308
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 2 cut(s) 241, 298
BstMBI GATC 2 cut(s) 238, 295
BstMWI GCNNNNNNNGC 2 cut(s) 189, 281
BstNI CCWGG 3 cut(s) 72, 243, 308
BstSCI CCNGG 3 cut(s) 70, 241, 306
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 287, 337
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 3 cut(s) 110, 176, 204
BtsCI GGATG 1 cut(s) 138
CviAII CATG 4 cut(s) 209, 286, 347, 370
CviJI RGCY 5 cut(s) 110, 146, 176, 183, 204
CviKI_1 RGCY 5 cut(s) 110, 146, 176, 183, 204
DpnI GATC 2 cut(s) 240, 297
DpnII GATC 2 cut(s) 238, 295
DriI GACNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 251
Eam1105I GACNNNNNGTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 55, 177
Eco147I AGGCCT 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 70, 241, 306
EcoT14I CCWWGG 2 cut(s) 55, 177
ErhI CCWWGG 2 cut(s) 55, 177
FaeI CATG 4 cut(s) 212, 289, 350, 373
FaiI YATR 8 cut(s) 52, 107, 210, 287, 333, 348, 371, 376
FalI AAGNNNNNCTT 3 cut(s) 32, 39, 71
FatI CATG 4 cut(s) 208, 285, 346, 369
Fnu4HI GCNGC 2 cut(s) 276, 351
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 276, 351
FspBI CTAG 1 cut(s) 266
GluI GCNGC 2 cut(s) 276, 351
HaeIII GGCC 3 cut(s) 110, 176, 204
Hin1II CATG 4 cut(s) 212, 289, 350, 373
HinfI GANTC 2 cut(s) 21, 269
HphI GGTGA 2 cut(s) 170, 236
Hpy166II GTNNAC 2 cut(s) 86, 263
Hpy188I TCNGA 2 cut(s) 129, 250
Hpy8I GTNNAC 2 cut(s) 86, 263
HpyAV CCTTC 2 cut(s) 95, 197
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 281
Hsp92II CATG 4 cut(s) 212, 289, 350, 373
Kzo9I GATC 2 cut(s) 238, 295
LmnI GCTCC 2 cut(s) 151, 217
LpnPI CCDG 6 cut(s) 57, 84, 228, 255, 293, 320
Lsp1109I GCAGC 2 cut(s) 287, 337
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 41, 94
MalI GATC 2 cut(s) 240, 297
MboI GATC 2 cut(s) 238, 295
MboII GAAGA 3 cut(s) 16, 56, 268
MflI RGATCY 1 cut(s) 238
MlyI GAGTC 2 cut(s) 30, 263
MnlI CCTC 4 cut(s) 5, 99, 121, 215
MspR9I CCNGG 3 cut(s) 72, 243, 308
MvaI CCWGG 3 cut(s) 72, 243, 308
MwoI GCNNNNNNNGC 2 cut(s) 189, 281
NdeII GATC 2 cut(s) 238, 295
NlaIII CATG 4 cut(s) 212, 289, 350, 373
NmuCI GTSAC 1 cut(s) 94
PceI AGGCCT 1 cut(s) 204
PkrI GCNGC 2 cut(s) 277, 352
PleI GAGTC 2 cut(s) 29, 263
PpsI GAGTC 2 cut(s) 29, 263
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 70, 241, 306
PspGI CCWGG 3 cut(s) 70, 241, 306
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 238
SatI GCNGC 2 cut(s) 276, 351
Sau3AI GATC 2 cut(s) 238, 295
SchI GAGTC 2 cut(s) 30, 263
ScrFI CCNGG 3 cut(s) 72, 243, 308
SetI ASST 5 cut(s) 91, 106, 148, 312, 317
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 204
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 3 cut(s) 70, 241, 306
StyI CCWWGG 2 cut(s) 55, 177
TaqI TCGA 1 cut(s) 19
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 275, 350
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.