Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17069688 .. 17071047

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCGGGTTCTCGGAGGTGGGAGGAAAGCACCTGGAGTATTCCAAGTTTTGGAAGAATAATAGCAATCAATCCATTTCTCAAAAATCAAAGCAAATTAACATATCTGGTAGAAGAGGCATGCAAATTACTTATACTCCCGCATTTCTCTAGTCTCACATCCTTGGTGTTCGTTCCCCGTTACGGTGATATCAGATATCTATTGTTCTCTTCATGTCTAACTATTCATTTCCTCAAAAGACTTTTGGAGGTTCAATCTGTTCACAAGTCCAGTGGAGGGATGGCACTTGATACTGCAATTTTTATCTGTTTCAGTTACTTCACGTCTAGTGCCACCATGATCGATCTACGCTCAGCACCTTACTGTAACCCAAGGGCTACCGGAGCCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

9.23

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	50, 182, 276
AgsI	TTSAA	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	197
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	150, 327
BlpI	GCTNAGC	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	6, 34
BmgBI	CACGTC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	6, 34
BpmI	CTGGAG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	162, 371
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 182, 276
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	162, 371
BseGI	GGATG	2 cut(s)	158, 285
BseLI	CCNNNNNNNGG	3 cut(s)	50, 182, 276
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	5, 381
BslI	CCNNNNNNNGG	3 cut(s)	50, 182, 276
BsmAI	GTCTC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	339, 343
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	365
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	162, 371
BssMI	GATC	2 cut(s)	339, 343
BssT1I	CCWWGG	2 cut(s)	162, 371
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	185, 365
Bst6I	CTCTTC	2 cut(s)	108, 214
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	158, 285
BstKTI	GATC	2 cut(s)	342, 346
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	339, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	4, 32
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	158, 285
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	342
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	3 cut(s)	120, 213, 337
CviJI	RGCY	2 cut(s)	377, 386
CviKI_1	RGCY	2 cut(s)	377, 386
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	2 cut(s)	341, 345
DpnII	GATC	2 cut(s)	339, 343
Eam1104I	CTCTTC	2 cut(s)	108, 214
EarI	CTCTTC	2 cut(s)	108, 214
Eco130I	CCWWGG	2 cut(s)	162, 371
Eco32I	GATATC	2 cut(s)	190, 197
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	2 cut(s)	190, 197
EcoT14I	CCWWGG	2 cut(s)	162, 371
ErhI	CCWWGG	2 cut(s)	162, 371
FaeI	CATG	3 cut(s)	123, 216, 340
FaiI	YATR	5 cut(s)	103, 121, 134, 214, 338
FatI	CATG	3 cut(s)	119, 212, 336
FauI	CCCGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	145, 292
FspBI	CTAG	2 cut(s)	150, 327
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	2 cut(s)	5, 381
Hin1II	CATG	3 cut(s)	123, 216, 340
HpaII	CCGG	2 cut(s)	5, 381
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	15, 194
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	185, 365
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	123, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	123, 216, 340
Kzo9I	GATC	2 cut(s)	339, 343
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	5 cut(s)	18, 19, 46, 92, 283
MaeI	CTAG	2 cut(s)	150, 327
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	179, 314, 365
MalI	GATC	2 cut(s)	341, 345
MboI	GATC	2 cut(s)	339, 343
MboII	GAAGA	3 cut(s)	66, 125, 201
MluCI	AATT	4 cut(s)	95, 125, 297, 391
MnlI	CCTC	6 cut(s)	9, 16, 109, 241, 242, 269
MseI	TTAA	1 cut(s)	98
MspI	CCGG	2 cut(s)	5, 381
MspR9I	CCNGG	2 cut(s)	6, 34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	339, 343
NlaIII	CATG	3 cut(s)	123, 216, 340
NlaIV	GGNNCC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	339, 343
ScrFI	CCNGG	2 cut(s)	6, 34
SetI	ASST	5 cut(s)	20, 35, 252, 326, 361
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	4 cut(s)	95, 125, 297, 391
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	150, 327
StyD4I	CCNGG	2 cut(s)	4, 32
StyI	CCWWGG	2 cut(s)	162, 371
TaaI	ACNGT	2 cut(s)	185, 365
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	342
TasI	AATT	4 cut(s)	95, 125, 297, 391
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	201, 215
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	50
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	150, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.