RchiOBHm_Chr6g0263341

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
18196906 .. 18202408
5503 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGAAGCGGTGGCAACAAGCATCCCATTTGAACACTATAAGAAGACAATCTATCTTCTTTCTGTACGGCTGATATGGAAAGAGCAGGTTTCGCATCTGGATTTGGATGTTAGCTATCTGTTGTGGATTGTAATACACAGCAGAGTTTGGAATATGGTGGTGAATAGAATTCAGAGCGTGAAGGGGACGGTGGTTATTGATGTATTCTTTGTTATCAACCCATTAACTATGAAGCTTGGCCAAGAACCCTGGCAGACCACTTCCTGCCGGTCATCTTAA

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

8.89

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 114, 235
AluI AGCT 2 cut(s) 114, 235
AoxI GGCC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 172
BalI TGGCCA 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 2 cut(s) 30, 103
BpiI GAAGAC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 267
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 21, 112
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 240
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 190
BstF5I GGATG 2 cut(s) 21, 112
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 21, 112
BveI ACCTGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 267
Csp6I GTAC 1 cut(s) 65
CviJI RGCY 4 cut(s) 70, 114, 235, 240
CviKI_1 RGCY 4 cut(s) 70, 114, 235, 240
CviQI GTAC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 248
FaiI YATR 4 cut(s) 39, 76, 155, 230
FaqI GGGAC 1 cut(s) 199
FokI GGATG 2 cut(s) 8, 119
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 233
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 71, 83, 235, 262
LweI GCATC 2 cut(s) 30, 103
MboII GAAGA 2 cut(s) 47, 55
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 224, 277
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 224, 277
ScrFI CCNGG 1 cut(s) 250
SetI ASST 3 cut(s) 90, 116, 237
SfaNI GCATC 2 cut(s) 30, 103
SgeI CNNG 8 cut(s) 30, 98, 110, 190, 248, 254, 261, 262
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 190
TasI AATT 1 cut(s) 168
Tru1I TTAA 2 cut(s) 224, 277
Tru9I TTAA 2 cut(s) 224, 277
TspDTI ATGAA 1 cut(s) 245
XapI RAATTY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.