RchiOBHm_Chr6g0266071

CRAL/TRIO, N-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
22172610 .. 22172894
285 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGTATGAAAGAATTTTCAGGGACAAGGAGAAGCTCAAGAAGTTCTTGAGGTGGAGAGTTCAGGTCCTTGAAAAGGGTATCAACATCTTACATTTTAATCCAGGAGGGATCAAGTCCATCATCCAAGTCACTAATCTCAAGGACATGCCCAAAAGAGAGCTCAAGGTTGCTTCAAATCAGATCATTTTACTGTTTCAAGACAACTACCCAGAAATATTGGCCAGAAGGGTAGTGAACTCTTGGTTAATTCTCATATGGGTAGTTAATTATGTTGTGGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

11.22

Weight (kDa)

10.13

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 71, 174, 197
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 34, 160
AluI AGCT 2 cut(s) 34, 160
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BalI TGGCCA 1 cut(s) 221
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 102
BpuEI CTTGAG 4 cut(s) 20, 67, 122, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 73
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 108, 180
BspANI GGCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 116
BssMI GATC 2 cut(s) 108, 180
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 111, 183
BstMBI GATC 2 cut(s) 108, 180
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 145
CviJI RGCY 3 cut(s) 34, 160, 221
CviKI_1 RGCY 3 cut(s) 34, 160, 221
DpnI GATC 2 cut(s) 110, 182
DpnII GATC 2 cut(s) 108, 180
EaeI YGGCCR 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 148
FaiI YATR 5 cut(s) 6, 146, 254, 256, 270
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 144
FauNDI CATATG 1 cut(s) 254
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 37, 46, 197
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 2 cut(s) 108, 180
LpnPI CCDG 6 cut(s) 4, 47, 87, 114, 222, 235
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 110, 182
MboI GATC 2 cut(s) 108, 180
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 3 cut(s) 12, 246, 265
MluNI TGGCCA 1 cut(s) 221
MnlI CCTC 2 cut(s) 42, 98
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 3 cut(s) 96, 245, 264
Msp20I TGGCCA 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 254
NdeII GATC 2 cut(s) 108, 180
NlaIII CATG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 96, 245, 264
Sau3AI GATC 2 cut(s) 108, 180
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 36, 53, 66, 162, 168
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 4 cut(s) 35, 46, 137, 161
SmoI CTYRAG 4 cut(s) 35, 46, 137, 161
Sse9I AATT 3 cut(s) 12, 246, 265
SspI AATATT 1 cut(s) 216
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 192
TasI AATT 3 cut(s) 12, 246, 265
Tru1I TTAA 3 cut(s) 96, 245, 264
Tru9I TTAA 3 cut(s) 96, 245, 264
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.