RchiOBHm_Chr6g0266301

Acyl-coenzyme A oxidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
22499929 .. 22500721
793 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGAATCATCAATTTTTCAGAACACTTAACAATATAGAGAAGAATGTCTTAGCTACGTTGAGGACCTTGTATGCATTGAGTTGCTTGGAAGAGGTTGTGGCATTCCTCCGATACGGGTACTTATCAATAGATAATGTCGCTGCCATTAGGAAAGAAGTAAGCAGACTCTACAGGGAGCTACGACCTCATGCACTTGCCTTGATCATATCGTTCAAATAA

Protein Analysis

72

Amino Acids

8.43

Weight (kDa)

9.65

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACOX PF01756 10 - 71 1.3e-10 Acyl-CoA oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 2 cut(s) 53, 178
AluI AGCT 2 cut(s) 53, 178
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 63
AvaII GGWCC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 127
BclI TGATCA 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BseXI GCAGC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 201
BssMI GATC 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 49
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 188
CviJI RGCY 2 cut(s) 53, 178
CviKI_1 RGCY 2 cut(s) 53, 178
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 76
FaeI CATG 1 cut(s) 191
FaiI YATR 4 cut(s) 35, 72, 189, 206
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 4, 165
Hpy188I TCNGA 2 cut(s) 20, 110
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 74, 191
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 127
MaeII ACGT 1 cut(s) 56
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 2 cut(s) 52, 101
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 4 cut(s) 54, 85, 116, 195
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 101
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 76
PctI GAATGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
PspPI GGNCC 1 cut(s) 63
PspPPI RGGWCCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 159
SetI ASST 6 cut(s) 55, 59, 68, 96, 180, 187
SfcI CTRYAG 1 cut(s) 169
SgeI CNNG 7 cut(s) 79, 97, 127, 184, 200, 206, 211
SinI GGWCC 1 cut(s) 63
Sse9I AATT 1 cut(s) 11
TaiI ACGT 1 cut(s) 59
TasI AATT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.