Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22538975 .. 22540845

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAGTCTGCTGGGAACGCTATGCATGTCTTTATCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGATATTCACTTTTACAGGAGATGTAAACATGCATGCTGGTGTGAATAAAATTTCACTTCCAAGTGTAGCTGTTGGATTACCGGCCAATTTTGATGCACCTGAAGGGGATGAGCCTTTGGCTTTGGATATGGGGAGCATGGGGAAGGGTCAAGTATGGATCAATGAGGAGAGTATTGGAAGATACTGGACTATTCATGCTAATGGTGACTGTAGTGCGTATCATGTTCCTCGGTATTGGCTCAAGCCATCTCAAAATCTGTTGGTTGTTTTTGAGGAGCTTGTTGGCGATGTTTCAAAGATTGATCTTCTAAAAACATCCGTGAGGACCATCTGTGCCGAGATTTCTGAAAGTCACCCACTCGTTAGGGAATTGCACACCAAGAGCCAAGGCAAATTGAAAGAGCAAAAGAAGCCTAAACTTAGCCTAGAGTGTACAAATGGGCACTCTATTTCTGCTATTAAATTTTCAAGCTTCGGTACTCCATCCGGAAGCTGTGGGAACTATAAGCATTGTATTTGTCACGCACCAAACTCTACCCCTGTGCTAAATAAGGTACCCTTGCACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

216

Amino Acids

23.51

Weight (kDa)

6.54

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	55 - 112	1e-20	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	566
AclWI	GGATC	2 cut(s)	61, 245
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	129, 542
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	514, 559, 636
AgsI	TTSAA	3 cut(s)	375, 478, 549
AluBI	AGCT	5 cut(s)	46, 149, 358, 552, 573
AluI	AGCT	5 cut(s)	46, 149, 358, 552, 573
AlwI	GGATC	2 cut(s)	61, 245
Aor13HI	TCCGGA	1 cut(s)	566
AoxI	GGCC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	129, 542
Asp718I	GGTACC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	296, 425
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	634
BccI	CCATC	3 cut(s)	334, 416, 571
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	636
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	308, 466
BsaWI	WCCGGW	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	308, 466
BseGI	GGATG	3 cut(s)	193, 395, 563
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	260, 368
BseSI	GKGCMC	1 cut(s)	525
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	161, 567
BslFI	GGGAC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp13I	TCCGGA	1 cut(s)	566
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	53, 237, 382
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	566
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	2 cut(s)	61, 245
BspT107I	GGYRCC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	308, 466
BssMI	GATC	3 cut(s)	53, 237, 382
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	49, 500
BstF5I	GGATG	3 cut(s)	193, 395, 563
BstKTI	GATC	3 cut(s)	56, 240, 385
BstMBI	GATC	3 cut(s)	53, 237, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 490
BstNSI	RCATGY	3 cut(s)	29, 112, 116
BstSFI	CTRYAG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	193, 395, 563
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	513, 558, 635
CviAII	CATG	6 cut(s)	26, 109, 113, 217, 275, 302
CviQI	GTAC	3 cut(s)	513, 558, 635
DdeI	CTNAG	2 cut(s)	49, 500
DpnI	GATC	3 cut(s)	55, 239, 384
DpnII	GATC	3 cut(s)	53, 237, 382
EaeI	YGGCCR	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	2 cut(s)	27, 114
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	6 cut(s)	29, 112, 116, 220, 278, 305
FalI	AAGNNNNNCTT	1 cut(s)	623
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	6 cut(s)	25, 108, 112, 216, 274, 301
FokI	GGATG	3 cut(s)	200, 382, 550
FspBI	CTAG	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	161, 567
Hin1II	CATG	6 cut(s)	29, 112, 116, 220, 278, 305
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	161, 567
HphI	GGTGA	2 cut(s)	296, 425
Hpy166II	GTNNAC	2 cut(s)	106, 513
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	51, 567
Hpy8I	GTNNAC	2 cut(s)	106, 513
HpyAV	CCTTC	2 cut(s)	176, 217
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	7 cut(s)	4, 25, 73, 112, 176, 454, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 490
HpyF3I	CTNAG	2 cut(s)	49, 500
Hsp92II	CATG	6 cut(s)	29, 112, 116, 220, 278, 305
Kpn2I	TCCGGA	1 cut(s)	566
KpnI	GGTACC	1 cut(s)	638
Kzo9I	GATC	3 cut(s)	53, 237, 382
LmnI	GCTCC	2 cut(s)	213, 355
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	3 cut(s)	284, 431, 599
MalI	GATC	3 cut(s)	55, 239, 384
MboI	GATC	3 cut(s)	53, 237, 382
MboII	GAAGA	2 cut(s)	270, 377
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	5 cut(s)	129, 166, 449, 473, 542
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	238, 318, 346, 396
Mph1103I	ATGCAT	2 cut(s)	27, 114
MroI	TCCGGA	1 cut(s)	566
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	117, 279
MspI	CCGG	2 cut(s)	161, 567
MwoI	GCNNNNNNNGC	2 cut(s)	17, 490
NdeII	GATC	3 cut(s)	53, 237, 382
NlaIII	CATG	6 cut(s)	29, 112, 116, 220, 278, 305
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	284, 431, 599
NsiI	ATGCAT	2 cut(s)	27, 114
NspI	RCATGY	3 cut(s)	29, 112, 116
PaeI	GCATGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	405
RsaI	GTAC	3 cut(s)	514, 559, 636
RsaNI	GTAC	3 cut(s)	513, 558, 635
RseI	CAYNNNNRTG	2 cut(s)	117, 279
SaqAI	TTAA	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	53, 237, 382
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	7 cut(s)	48, 151, 181, 360, 554, 575, 636
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	117, 279
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	5 cut(s)	129, 166, 449, 473, 542
SspMI	CTAG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	290
TasI	AATT	5 cut(s)	129, 166, 449, 473, 542
TatI	WGTACW	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	3 cut(s)	284, 431, 599
Tsp45I	GTSAC	3 cut(s)	284, 431, 599
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	2 cut(s)	129, 542
XceI	RCATGY	3 cut(s)	29, 112, 116
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	2 cut(s)	27, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.