RchiOBHm_Chr6g0266351

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
22545306 .. 22546046
741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGACAAAGTTGGTGCCAAACAAAAGAATTTTATGGGCAATGAAGGCCTTGCTTTTGGGTGTAGTAATTCTTGTACGCAAGGATTATAGACAGAATTTGCATCCATATGTACTCACAGCCTTGTCCCTTTCCCACCTGTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACATCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGTAGTCTCAAACACTCTACGCCCCCTTGTACACCATCCCGTGCGGCGTATATCTACAGGCAAGGGAGGAGCCATCTTCGAGCTAACGGTTACGGCAAAACCTTCGCGGACTCAAATTCTGCTGGTCATCTTTGCTTTCACCATCTCGGGTTTCATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCGTCCCACAGGGGAAATGATGTGCTTCTTTCTCCTACAAGGTGTGTGCTTGGAAATTGAACTGGAGGTGAAGAAGGCTCTAGCTCATAGGGTACGGTTTCACCCACTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTAACTACCGATTGGCTTTTTTTTCCTCACGTAATCAGAACTGGTGCCGATGCAAAGAGTTTAGGAGAGTGTGCCATTATGGTGGATTTTGTGAAGACCAACGGTTCGTTATTGTATTATTGGCAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

246

Amino Acids

28.19

Weight (kDa)

9.61

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 70 - 166 7.4e-17 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 650
AccII CGCG 2 cut(s) 382, 466
AciI CCGC 2 cut(s) 319, 382
AcsI RAATTY 3 cut(s) 27, 94, 390
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 5 cut(s) 75, 111, 140, 306, 558
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 3 cut(s) 203, 220, 524
AhlI ACTAGT 1 cut(s) 571
AluBI AGCT 3 cut(s) 358, 439, 548
AluI AGCT 3 cut(s) 358, 439, 548
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 286
Ama87I CYCGRG 2 cut(s) 206, 421
AoxI GGCC 2 cut(s) 45, 259
ApoI RAATTY 3 cut(s) 27, 94, 390
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 406, 544, 557
AvaI CYCGRG 2 cut(s) 206, 421
BanI GGYRCC 2 cut(s) 13, 650
BanII GRGCYC 1 cut(s) 441
BauI CACGAG 2 cut(s) 434, 459
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 441
BccI CCATC 4 cut(s) 261, 318, 356, 425
BceAI ACGGC 2 cut(s) 246, 384
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BcoDI GTCTC 1 cut(s) 286
BcuI ACTAGT 1 cut(s) 571
BfaI CTAG 3 cut(s) 149, 545, 572
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BmeT110I CYCGRG 2 cut(s) 206, 421
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 5 cut(s) 15, 260, 272, 346, 652
BmsI GCATC 2 cut(s) 109, 646
BpiI GAAGAC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 531, 652
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 100, 310
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 531, 652
BseRI GAGGAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 382, 466
BshFI GGCC 2 cut(s) 47, 261
BshNI GGYRCC 2 cut(s) 13, 650
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 2 cut(s) 206, 421
BslFI GGGAC 2 cut(s) 109, 453
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 109, 453
BsnI GGCC 2 cut(s) 47, 261
BsoBI CYCGRG 2 cut(s) 206, 421
Bsp1286I GDGCHC 1 cut(s) 441
Bsp1407I TGTACA 1 cut(s) 304
BspACI CCGC 2 cut(s) 319, 382
BspANI GGCC 2 cut(s) 47, 261
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 2 cut(s) 382, 466
BspLI GGNNCC 5 cut(s) 15, 260, 272, 346, 652
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 2 cut(s) 13, 650
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 2 cut(s) 531, 652
BssECI CCNNGG 1 cut(s) 142
BssSI CACGAG 2 cut(s) 434, 459
BssT1I CCWWGG 1 cut(s) 142
Bst2BI CACGAG 2 cut(s) 434, 459
Bst4CI ACNGT 3 cut(s) 364, 561, 710
Bst6I CTCTTC 2 cut(s) 249, 446
BstAUI TGTACA 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 637
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 100, 310
BstFNI CGCG 2 cut(s) 382, 466
BstHHI GCGC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 2 cut(s) 382, 466
BstV2I GAAGAC 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 688
BsuRI GGCC 2 cut(s) 47, 261
BtsCI GGATG 2 cut(s) 100, 310
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 455
Csp6I GTAC 5 cut(s) 74, 110, 139, 305, 557
CviAII CATG 2 cut(s) 190, 430
CviQI GTAC 5 cut(s) 74, 110, 139, 305, 557
DdeI CTNAG 1 cut(s) 167
Eam1104I CTCTTC 2 cut(s) 249, 446
EarI CTCTTC 2 cut(s) 249, 446
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 2 cut(s) 206, 421
EcoICRI GAGCTC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 193, 433
FaiI YATR 9 cut(s) 34, 87, 106, 108, 191, 326, 431, 552, 686
FaqI GGGAC 2 cut(s) 109, 453
FatI CATG 2 cut(s) 189, 429
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 2 cut(s) 87, 297
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 3 cut(s) 149, 545, 572
GlaI GCGC 1 cut(s) 465
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 2 cut(s) 47, 261
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 466
Hin1II CATG 2 cut(s) 193, 433
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 1 cut(s) 385
HphI GGTGA 3 cut(s) 406, 544, 557
Hpy166II GTNNAC 2 cut(s) 307, 588
Hpy188I TCNGA 2 cut(s) 168, 644
Hpy188III TCNNGA 2 cut(s) 149, 248
Hpy8I GTNNAC 2 cut(s) 307, 588
HpyAV CCTTC 3 cut(s) 37, 387, 532
HpyCH4III ACNGT 3 cut(s) 364, 561, 710
HpyCH4IV ACGT 3 cut(s) 453, 590, 636
HpyCH4V TGCA 3 cut(s) 100, 433, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 3 cut(s) 453, 590, 636
Hsp92II CATG 2 cut(s) 193, 433
HspAI GCGC 1 cut(s) 464
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 8 cut(s) 149, 233, 318, 383, 459, 512, 564, 633
LweI GCATC 2 cut(s) 109, 646
MaeI CTAG 3 cut(s) 149, 545, 572
MaeII ACGT 3 cut(s) 453, 590, 636
MaeIII GTNAC 3 cut(s) 364, 454, 607
MboII GAAGA 5 cut(s) 236, 343, 433, 547, 712
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 6 cut(s) 27, 66, 94, 390, 519, 736
MlyI GAGTC 1 cut(s) 379
MnlI CCTC 4 cut(s) 192, 335, 523, 642
MslI CAYNNNNRTG 2 cut(s) 105, 686
MvnI CGCG 2 cut(s) 382, 466
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 1 cut(s) 106
NlaIII CATG 2 cut(s) 193, 433
NlaIV GGNNCC 5 cut(s) 15, 260, 272, 346, 652
NmuCI GTSAC 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 5 cut(s) 15, 260, 272, 346, 652
PspPI GGNCC 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 206
RsaI GTAC 5 cut(s) 75, 111, 140, 306, 558
RsaNI GTAC 5 cut(s) 74, 110, 139, 305, 557
RseI CAYNNNNRTG 2 cut(s) 105, 686
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 446
SatI GCNGC 1 cut(s) 320
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 379
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 109, 646
SfcI CTRYAG 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 105, 686
SmlI CTYRAG 2 cut(s) 183, 206
SmoI CTYRAG 2 cut(s) 183, 206
SpeI ACTAGT 1 cut(s) 571
Sse9I AATT 6 cut(s) 27, 66, 94, 390, 519, 736
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 2 cut(s) 319, 382
SspMI CTAG 3 cut(s) 149, 545, 572
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 47
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 364, 561, 710
TaiI ACGT 3 cut(s) 456, 593, 639
TaqI TCGA 2 cut(s) 207, 354
TasI AATT 6 cut(s) 27, 66, 94, 390, 519, 736
TatI WGTACW 2 cut(s) 109, 304
TauI GCSGC 1 cut(s) 322
TseFI GTSAC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 56, 418
XapI RAATTY 3 cut(s) 27, 94, 390
XbaI TCTAGA 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 3 cut(s) 149, 545, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.