RchiOBHm_Chr6g0266571

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
23092683 .. 23095417
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAAATTGATTTTGCCCCAGAAATTAATTTGCTGCTCAATCATTTTGCATGTGCACTTTCCAAGTACTGAGGAATCATTGGATGAACTACTTTTACTAAAAGAGAATTGGTACTTTTATATATGGCAGGGTGAAAGCAAACCTTTTAAACCTTACAATCACCGGTATCATGTCCCACATAAAGCATCAGGGAGTACTGCCCCTTTTTGGTACTCAATCAAGAGAGCTTCGTCCTACATCATCGTCTTAGCTTCATATTCAGCATATGAACTCTCGCTCAACTCTCTCTCTGCCCTACTTTTTCTCCATCTCTCAAGTGTTGAAGAGAGCAGCAATCTCTTAATCACTAACCATCCTTTAAGAGTTCGGCTCATCTCCATCTCCATCAAAATGGCGAGAATTTTATACCCATATGGAATGAAATCTCAGACTTGCACAAGAGGTTATCTCTCTTGA

Protein Analysis

163

Amino Acids

18.73

Weight (kDa)

9.24

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 435
AfaI GTAC 4 cut(s) 103, 149, 232, 248
AfiI CCNNNNNNNGG 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 359
AluBI AGCT 2 cut(s) 263, 287
AluI AGCT 2 cut(s) 263, 287
Alw21I GWGCWC 1 cut(s) 93
Alw44I GTGCAC 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 69, 366
ApoI RAATTY 1 cut(s) 435
AseI ATTAAT 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 179, 188
BaeGI GKGCMC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 56, 378
BccI CCATC 4 cut(s) 351, 396, 422, 428
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 70, 367
BlsI GCNGC 2 cut(s) 71, 368
BmcAI AGTACT 2 cut(s) 103, 232
BmsI GCATC 1 cut(s) 230
BplI GAGNNNNNCTC 3 cut(s) 390, 422, 468
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 124, 388
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 96, 476
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 56, 378
BshTI ACCGGT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 97, 475
BspHI TCATGA 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 105, 283, 462
BstF5I GGATG 2 cut(s) 124, 388
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 56, 378
BstXI CCANNNNNNTGG 1 cut(s) 427
BtsCI GGATG 2 cut(s) 124, 388
CciI TCATGA 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 198
Csp6I GTAC 4 cut(s) 102, 148, 231, 247
CspAI ACCGGT 1 cut(s) 198
CviAII CATG 3 cut(s) 37, 86, 206
CviJI RGCY 3 cut(s) 263, 287, 406
CviKI_1 RGCY 3 cut(s) 263, 287, 406
CviQI GTAC 4 cut(s) 102, 148, 231, 247
DdeI CTNAG 3 cut(s) 105, 283, 462
DraI TTTAAA 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 40, 89, 209
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 36, 85, 205
FauNDI CATATG 2 cut(s) 301, 448
Fnu4HI GCNGC 2 cut(s) 70, 367
FokI GGATG 2 cut(s) 131, 375
Fsp4HI GCNGC 2 cut(s) 70, 367
GluI GCNGC 2 cut(s) 70, 367
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 40, 89, 209
HinfI GANTC 2 cut(s) 33, 110
HpaII CCGG 1 cut(s) 199
HphI GGTGA 2 cut(s) 179, 188
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 3 cut(s) 37, 256, 489
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 28, 85, 91, 471
HpyF3I CTNAG 3 cut(s) 105, 283, 462
Hsp92II CATG 3 cut(s) 40, 89, 209
LpnPI CCDG 5 cut(s) 14, 68, 149, 210, 212
Lsp1109I GCAGC 2 cut(s) 56, 378
LweI GCATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 5 cut(s) 41, 59, 63, 142, 435
MnlI CCTC 2 cut(s) 100, 470
MseI TTAA 4 cut(s) 62, 183, 377, 395
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 1 cut(s) 199
NdeI CATATG 2 cut(s) 301, 448
NlaIII CATG 3 cut(s) 40, 89, 209
NspI RCATGY 1 cut(s) 89
PagI TCATGA 1 cut(s) 36
PfeI GAWTC 2 cut(s) 33, 110
PinAI ACCGGT 1 cut(s) 198
PkrI GCNGC 2 cut(s) 71, 368
PshBI ATTAAT 1 cut(s) 62
PsrI GAACNNNNNNTAC 2 cut(s) 114, 146
PstI CTGCAG 1 cut(s) 30
RsaI GTAC 4 cut(s) 103, 149, 232, 248
RsaNI GTAC 4 cut(s) 102, 148, 231, 247
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 4 cut(s) 62, 183, 377, 395
SatI GCNGC 2 cut(s) 70, 367
ScaI AGTACT 2 cut(s) 103, 232
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 15, 181, 190, 265, 289, 481
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 5 cut(s) 41, 59, 63, 142, 435
StyI CCWWGG 1 cut(s) 13
TasI AATT 5 cut(s) 41, 59, 63, 142, 435
TatI WGTACW 2 cut(s) 101, 230
TfiI GAWTC 2 cut(s) 33, 110
Tru1I TTAA 4 cut(s) 62, 183, 377, 395
Tru9I TTAA 4 cut(s) 62, 183, 377, 395
TseI GCWGC 2 cut(s) 69, 366
TspDTI ATGAA 5 cut(s) 53, 135, 279, 318, 470
VneI GTGCAC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 62
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 89
ZrmI AGTACT 2 cut(s) 103, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.