RchiOBHm_Chr6g0268331

Stress responsive A/B Barrel Domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
25171193 .. 25174295
3103 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 180 bp
ATGCTGGTTTTGTACCAAATGGAATTGGGAGCAAAGGAATCAACCTGTGTGAATTTTAATCCCAGCAGCAAGGAGTATACGCACGGAGTAGCAATAAGATTTCGGTCATGTGAAGCCTCTTTCCTCCATAAACCCTTTGTTTTGGGATGTAATTTTAACCGATCTGCATGTTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.68

Weight (kDa)

8.46

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 52
BbvI GCAGC 1 cut(s) 78
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BseGI GGATG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 161
BssMI GATC 1 cut(s) 161
BssNAI GTATAC 1 cut(s) 78
Bst1107I GTATAC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 78
BstZ17I GTATAC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 152
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 108, 168
CviJI RGCY 1 cut(s) 116
CviKI_1 RGCY 1 cut(s) 116
CviQI GTAC 1 cut(s) 13
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
FaeI CATG 2 cut(s) 111, 171
FaiI YATR 4 cut(s) 78, 109, 129, 169
FatI CATG 2 cut(s) 107, 167
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
GsaI CCCAGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 111, 171
HinfI GANTC 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 167, 175
Hsp92II CATG 2 cut(s) 111, 171
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 58, 76
Lsp1109I GCAGC 1 cut(s) 78
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MluCI AATT 3 cut(s) 23, 52, 151
MnlI CCTC 2 cut(s) 127, 134
MseI TTAA 2 cut(s) 57, 156
NdeII GATC 1 cut(s) 161
NlaIII CATG 2 cut(s) 111, 171
NspI RCATGY 1 cut(s) 171
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 62
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 57, 156
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 161
SetI ASST 1 cut(s) 47
SgeI CNNG 6 cut(s) 17, 57, 75, 82, 95, 120
Sse9I AATT 3 cut(s) 23, 52, 151
TaqII GACCGA 1 cut(s) 93
TasI AATT 3 cut(s) 23, 52, 151
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 57, 156
Tru9I TTAA 2 cut(s) 57, 156
TseI GCWGC 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 99
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.