RchiOBHm_Chr6g0268471

tRNA-dihydrouridine(47) synthase NAD(P)( )

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
25294824 .. 25295436
613 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGGCTTCTGATTCTGCCGCTGACTGGGTTAGGCTCTCTGAGATGTTGCTTGGGAAGGTTCCAGATGGTTTCACATTTGCACAAAGCATAAATCCAATGCTTACGACCGAGCAGAAAACAGCTAATATTTGCATGGTTGGTTTATCAACGTTTTTGTGGATTAAGCGGATAAGTTTTGTCTACTTTGCCTTGTGCCTCATTCAACTTTGGGTACTTTTGGTGGAAGCGGGTGATGGCTTATATGGTAAAAACATTTCTCAACAGTAA

Protein Analysis

88

Amino Acids

9.81

Weight (kDa)

5.04

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AciI CCGC 3 cut(s) 18, 166, 227
AclI AACGTT 1 cut(s) 149
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 242
BccI CCATC 2 cut(s) 59, 227
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 24
BspACI CCGC 3 cut(s) 18, 166, 227
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 108
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 5, 34, 122, 237
CviKI_1 RGCY 4 cut(s) 5, 34, 122, 237
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 39
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 89, 134, 241, 243
FatI CATG 1 cut(s) 132
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 10, 40
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 80, 132
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 136
LpnPI CCDG 2 cut(s) 10, 75
MaeII ACGT 1 cut(s) 149
MnlI CCTC 1 cut(s) 206
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 20
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 60
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 18
SetI ASST 3 cut(s) 60, 124, 152
SgeI CNNG 7 cut(s) 37, 62, 74, 121, 145, 202, 240
SsiI CCGC 3 cut(s) 18, 166, 227
SspI AATATT 1 cut(s) 127
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 152
TaqII GACCGA 1 cut(s) 122
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.