Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25999937 .. 26004836

Gene Structure 4900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTGTATCAATCACATAAGTGGACTGAGTATGTTCGTGGGGCAACTAATGAGGATCTGCGAGTGGTGATAAAGCGTGTTGTTTTCCAGTTGCATTCCAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCTCCATTTGAGTTATCTGAATGTGGCTGGGGTGAATTTGAAATAGCAATTACACTATTTTTCCACAGTGATGTTTGCGAGAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCGAGAAGATGAATCTGGTCCTATGTTGACCAAGAAACCTGTGGTCGTGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGCATCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTGCTGGTTTGACTCTGTCTCCTCCTGTGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAGCAGATGAGCATTCCTCTCTCTGAAATTTCTGGATATATAATAAGGAACTTAGACCTGATTGATGTTATAAATTTTGTTGCATTTTTGCACGTAAGCTTAGTCTTAAACCAATTTGTTTACTTGCTCACGGTAAAGGCTGTGAAGCTGACGATGGATTGTAAAAGATATTTTTGGGTCTATTATGTGACAACCAAAATCATTCCAGGTCTAAGTTTCTTCCTTCCATCTGGTCTCTCTCTCTCTCTCTCTCTGGACAACACTTTGAACTGTATGACTGCTGCAACTTGCAACACAGTCAACAAATGTATGTGTATGGGCTCAGTAGAACTAAAAACATTATACGCAGATGCTTTTGTTTTGGTTAAGAGTCATGATGTTCTAGGGGTCTGTTTTTGTGTTCAAGCTCATATTGCTAAATTTCTAAGAGAGATAAGTTTGATGGATGTGCAAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

330

Amino Acids

37.5

Weight (kDa)

6.37

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	4 - 83	6.2e-29	YEATS family
pYEATS	PF20305	8 - 67	7.8e-10	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	63, 422
AcsI	RAATTY	5 cut(s)	167, 487, 558, 604, 950
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	6 cut(s)	106, 173, 241, 425, 799, 935
AjnI	CCWGG	1 cut(s)	736
AleI	CACNNNNGTG	2 cut(s)	19, 119
AluBI	AGCT	7 cut(s)	347, 500, 508, 527, 630, 679, 938
AluI	AGCT	7 cut(s)	347, 500, 508, 527, 630, 679, 938
Alw26I	GTCTC	2 cut(s)	411, 770
AlwI	GGATC	2 cut(s)	63, 422
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	521, 524, 812
ApoI	RAATTY	5 cut(s)	167, 487, 558, 604, 950
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	5 cut(s)	79, 123, 176, 353, 461
AvaII	GGWCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	854
BbvI	GCAGC	3 cut(s)	508, 536, 799
BccI	CCATC	3 cut(s)	679, 766, 967
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	411, 770
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	2 cut(s)	369, 522
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	522, 525, 813
BlsI	GCNGC	3 cut(s)	523, 526, 814
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	360, 871
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu10I	CCTNAGC	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	625
BsaI	GGTCTC	1 cut(s)	770
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bse1I	ACTGG	5 cut(s)	88, 99, 419, 475, 522
BseBI	CCWGG	1 cut(s)	738
BseGI	GGATG	3 cut(s)	351, 463, 982
BseMII	CTCAG	3 cut(s)	18, 315, 867
BseNI	ACTGG	5 cut(s)	88, 99, 419, 475, 522
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	508, 536, 799
BseYI	CCCAGC	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	411, 770
BsmI	GAATGC	2 cut(s)	94, 543
Bso31I	GGTCTC	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	3 cut(s)	55, 427, 460
BspCNI	CTCAG	3 cut(s)	19, 316, 866
BspHI	TCATGA	2 cut(s)	483, 904
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	63, 422
BspTNI	GGTCTC	1 cut(s)	770
BsrI	ACTGG	5 cut(s)	88, 99, 419, 475, 522
BssMI	GATC	3 cut(s)	55, 427, 460
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	4 cut(s)	200, 664, 803, 829
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	7 cut(s)	27, 324, 583, 631, 743, 853, 956
BstF5I	GGATG	3 cut(s)	351, 463, 982
BstKTI	GATC	3 cut(s)	58, 430, 463
BstMAI	GTCTC	2 cut(s)	411, 770
BstMBI	GATC	3 cut(s)	55, 427, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	2 cut(s)	369, 522
BstV1I	GCAGC	3 cut(s)	508, 536, 799
BstX2I	RGATCY	2 cut(s)	55, 427
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	2 cut(s)	55, 427
BtsCI	GGATG	3 cut(s)	351, 463, 982
BtsIMutI	CAGTG	2 cut(s)	205, 482
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	2 cut(s)	483, 904
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	484, 905
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	7 cut(s)	27, 324, 583, 631, 743, 853, 956
DpnI	GATC	3 cut(s)	57, 429, 462
DpnII	GATC	3 cut(s)	55, 427, 460
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	2 cut(s)	487, 908
FatI	CATG	2 cut(s)	483, 904
Fnu4HI	GCNGC	3 cut(s)	522, 525, 813
FokI	GGATG	3 cut(s)	338, 450, 989
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	3 cut(s)	522, 525, 813
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	3 cut(s)	522, 525, 813
GsaI	CCCAGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	487, 908
HincII	GTYRAC	2 cut(s)	276, 832
HindII	GTYRAC	2 cut(s)	276, 832
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	6 cut(s)	128, 260, 299, 358, 400, 901
HphI	GGTGA	5 cut(s)	79, 123, 176, 353, 461
Hpy166II	GTNNAC	4 cut(s)	24, 276, 652, 832
Hpy188I	TCNGA	4 cut(s)	151, 334, 496, 556
Hpy188III	TCNNGA	5 cut(s)	355, 484, 564, 785, 905
Hpy8I	GTNNAC	4 cut(s)	24, 276, 652, 832
HpyAV	CCTTC	2 cut(s)	339, 764
HpyCH4III	ACNGT	4 cut(s)	200, 664, 803, 829
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	7 cut(s)	94, 524, 614, 622, 815, 822, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	7 cut(s)	27, 324, 583, 631, 743, 853, 956
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	2 cut(s)	487, 908
Kzo9I	GATC	3 cut(s)	55, 427, 460
Lsp1109I	GCAGC	3 cut(s)	508, 536, 799
LweI	GCATC	2 cut(s)	360, 871
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	129, 449, 718
MalI	GATC	3 cut(s)	57, 429, 462
MboI	GATC	3 cut(s)	55, 427, 460
MboII	GAAGA	3 cut(s)	266, 437, 742
MflI	RGATCY	2 cut(s)	55, 427
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	7 cut(s)	167, 180, 487, 558, 604, 644, 950
MlyI	GAGTC	3 cut(s)	137, 394, 910
MnlI	CCTC	6 cut(s)	46, 144, 385, 420, 440, 558
MseI	TTAA	3 cut(s)	221, 638, 897
MslI	CAYNNNNRTG	3 cut(s)	19, 119, 201
MspR9I	CCNGG	1 cut(s)	738
Mva1269I	GAATGC	2 cut(s)	94, 543
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	944
NdeII	GATC	3 cut(s)	55, 427, 460
NlaIII	CATG	2 cut(s)	487, 908
NmuCI	GTSAC	3 cut(s)	129, 449, 718
OliI	CACNNNNGTG	2 cut(s)	19, 119
PagI	TCATGA	2 cut(s)	483, 904
PctI	GAATGC	2 cut(s)	94, 543
PfeI	GAWTC	3 cut(s)	260, 299, 358
PflFI	GACNNNGTC	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	523, 526, 814
PleI	GAGTC	3 cut(s)	136, 394, 909
PpsI	GAGTC	3 cut(s)	136, 394, 909
Ppu21I	YACGTR	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	736
PspPI	GGNCC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	55, 427
PsyI	GACNNNGTC	1 cut(s)	403
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	3 cut(s)	19, 119, 201
SaqAI	TTAA	3 cut(s)	221, 638, 897
SatI	GCNGC	3 cut(s)	522, 525, 813
Sau3AI	GATC	3 cut(s)	55, 427, 460
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	3 cut(s)	137, 394, 910
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	2 cut(s)	360, 871
SfcI	CTRYAG	2 cut(s)	369, 522
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	19, 119, 201
Sse9I	AATT	7 cut(s)	167, 180, 487, 558, 604, 644, 950
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	4 cut(s)	200, 664, 803, 829
TaiI	ACGT	1 cut(s)	627
TasI	AATT	7 cut(s)	167, 180, 487, 558, 604, 644, 950
TfiI	GAWTC	3 cut(s)	260, 299, 358
Tru1I	TTAA	3 cut(s)	221, 638, 897
Tru9I	TTAA	3 cut(s)	221, 638, 897
TscAI	CASTG	2 cut(s)	205, 482
TseFI	GTSAC	3 cut(s)	129, 449, 718
TseI	GCWGC	3 cut(s)	521, 524, 812
Tsp45I	GTSAC	3 cut(s)	129, 449, 718
TspDTI	ATGAA	4 cut(s)	221, 273, 472, 500
TspRI	CASTG	2 cut(s)	205, 482
Tth111I	GACNNNGTC	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	5 cut(s)	167, 487, 558, 604, 950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.