RchiOBHm_Chr6g0268891

auxin-induced protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
26098008 .. 26098302
295 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGGGTTTCAGGTTGCCTGGAATCGTTAGCGCCAAGAAAAGTCTCATCAGATCTCTATCTACTTCCAACACTTCAAAAAACTCAGGTATCCCAAAAGGCTACTTTGTAGTCTATGTGGGGGAGAGTCAGAAGAAGCGATCTGATTTGCTCAGTCAAGCTGAGGAAGAATTTGGATATGGTCATGCCATGGGCAGTATCACAATGCCCTGCAGTGAACATACTTTCCTTGATCTCACTACTCGCTCAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

9.25

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 1 cut(s) 16
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BbvCI CCTCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 98
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 55
BseMII CTCAG 3 cut(s) 96, 150, 163
BsmAI GTCTC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 50, 137, 229
Bsp19I CCATGG 1 cut(s) 186
BspCNI CTCAG 3 cut(s) 95, 151, 162
BspMAI CTGCAG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 50, 137, 229
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 82, 149, 159
BstDSI CCRYGG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 3 cut(s) 53, 140, 232
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 3 cut(s) 50, 137, 229
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuI GTATCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 32
CviAII CATG 2 cut(s) 182, 187
CviJI RGCY 2 cut(s) 99, 158
CviKI_1 RGCY 2 cut(s) 99, 158
DdeI CTNAG 3 cut(s) 82, 149, 159
DpnI GATC 3 cut(s) 52, 139, 231
DpnII GATC 3 cut(s) 50, 137, 229
Eco130I CCWWGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 185, 190
FaiI YATR 5 cut(s) 114, 177, 183, 188, 219
FatI CATG 2 cut(s) 181, 186
GlaI GCGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 33
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 185, 190
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 2 cut(s) 21, 124
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 50, 129, 142
Hpy8I GTNNAC 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 3 cut(s) 82, 149, 159
Hsp92II CATG 2 cut(s) 185, 190
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 3 cut(s) 50, 137, 229
LpnPI CCDG 4 cut(s) 3, 30, 69, 220
MalI GATC 3 cut(s) 52, 139, 231
MboI GATC 3 cut(s) 50, 137, 229
MboII GAAGA 2 cut(s) 142, 176
MflI RGATCY 1 cut(s) 50
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 50, 137, 229
NlaIII CATG 2 cut(s) 185, 190
PfeI GAWTC 1 cut(s) 21
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PstI CTGCAG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 50
Sau3AI GATC 3 cut(s) 50, 137, 229
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 18
SetI ASST 3 cut(s) 14, 88, 160
SfcI CTRYAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 186
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 21
TscAI CASTG 1 cut(s) 217
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.