RchiOBHm_Chr6g0268911

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
26140245 .. 26141621
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGACAGATTGTTTAGCAGCCCAAATAGTGTCTCAGATACAGAAGGTGATCTTTTCCAGCAAGAACCAATTAAATCTTATGAAGACTCTTTCTGCTGGGAAGAGCTTAGATGTTCCGAAAAGCTACTTTTCAGTTTATGTTGGGGTGAACCAGAAGAAGCGATTTGTGATTCCAATTGCGTACTTGAACGAGCCTTTGTTCCTGGATTTGTTGAGTCAAGCTGGAGAAGAATTTGGATACGATCATCCCATGGGTGGTTGTTTGGCTCCAAAACCAGTTGGCGTGCAAACTGTCTCTTTTGAGCGAGTGATTGCGCAGGCGTGCCAGCACCGCGGGGTGCAGTCGTCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

117

Amino Acids

12.78

Weight (kDa)

8.84

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 85 1.2e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AccII CGCG 1 cut(s) 333
AciI CCGC 2 cut(s) 331, 333
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 105, 123, 221
AluI AGCT 3 cut(s) 105, 123, 221
Alw26I GTCTC 2 cut(s) 36, 298
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 58, 157
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 36, 298
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 249, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 249, 331
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 36, 298
Bsp143I GATC 2 cut(s) 48, 241
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 331, 333
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 249, 331
BssMI GATC 2 cut(s) 48, 241
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 284, 318, 322, 326
BstDEI CTNAG 2 cut(s) 33, 106
BstDSI CCRYGG 2 cut(s) 249, 331
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 51, 244
BstMAI GTCTC 2 cut(s) 36, 298
BstMBI GATC 2 cut(s) 48, 241
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 89
BsuI GTATCC 1 cut(s) 230
BtgI CCRYGG 2 cut(s) 249, 331
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 284, 318, 322, 326
CfoI GCGC 1 cut(s) 316
Cfr42I CCGCGG 1 cut(s) 334
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 250
CviJI RGCY 6 cut(s) 20, 105, 123, 193, 221, 266
CviKI_1 RGCY 6 cut(s) 20, 105, 123, 193, 221, 266
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 33, 106
DpnI GATC 2 cut(s) 50, 243
DpnII GATC 2 cut(s) 48, 241
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 253
FaiI YATR 3 cut(s) 80, 138, 251
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 249
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 18
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 243
HhaI GCGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 85, 169, 214
HphI GGTGA 2 cut(s) 58, 157
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 36, 117
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 286, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 33, 106
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 314
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 48, 241
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 9 cut(s) 70, 81, 164, 188, 207, 215, 288, 302, 338
Lsp1109I GCAGC 1 cut(s) 29
MalI GATC 2 cut(s) 50, 243
MboI GATC 2 cut(s) 48, 241
MboII GAAGA 4 cut(s) 94, 112, 166, 239
MfeI CAATTG 1 cut(s) 174
MluCI AATT 3 cut(s) 68, 174, 230
MlyI GAGTC 2 cut(s) 79, 223
MseI TTAA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 330
NcoI CCATGG 1 cut(s) 249
NdeII GATC 2 cut(s) 48, 241
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 267
NsbI TGCGCA 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 2 cut(s) 79, 222
PpsI GAGTC 2 cut(s) 79, 222
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacII CCGCGG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 48, 241
SchI GAGTC 2 cut(s) 79, 223
ScrFI CCNGG 1 cut(s) 203
SetI ASST 4 cut(s) 48, 107, 125, 223
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
Sse9I AATT 3 cut(s) 68, 174, 230
SsiI CCGC 2 cut(s) 331, 333
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 292
TasI AATT 3 cut(s) 68, 174, 230
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 95
XapI RAATTY 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.