Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26842432 .. 26842681

Gene Structure 250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAAGTCACAGATGGCATCTCCAGGATTTACAGATGTCTTTGCTGGCTTGGTTGCTGTTGTTAACACCAAGTTTCCTGAGCTTGGTGAACTTCTGTTGAGAAGAATCGTCTTGCAGCTTAAGAGAGCATTTAAGCGGAACGACAAGCCACAACTACTAGCTGCTGTCAAATTTATCGCGCATCTCGTCAACCAGTGGCTCATGAGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

70

Amino Acids

7.98

Weight (kDa)

11.04

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	82, 118, 161
AluI	AGCT	3 cut(s)	82, 118, 161
ApeKI	GCWGC	2 cut(s)	115, 161
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	127, 148
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	2 cut(s)	116, 162
BlsI	GCNGC	2 cut(s)	117, 163
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	26, 190
BpmI	CTGGAG	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	127, 148
Bsh1236I	CGCG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	127, 148
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	181
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	6 cut(s)	48, 82, 118, 148, 161, 199
CviKI_1	RGCY	6 cut(s)	48, 82, 118, 148, 161, 199
DdeI	CTNAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	203, 211
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	116, 162
Fsp4HI	GCNGC	2 cut(s)	116, 162
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	116, 162
GsuI	CTGGAG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	2 cut(s)	64, 190
HindII	GTYRAC	2 cut(s)	64, 190
HinfI	GANTC	1 cut(s)	105
HpaI	GTTAAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	3 cut(s)	64, 89, 190
Hpy188III	TCNNGA	2 cut(s)	77, 202
Hpy8I	GTNNAC	3 cut(s)	64, 89, 190
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	179
KspAI	GTTAAC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	9, 30, 36, 90, 206
Lsp1109I	GCAGC	2 cut(s)	127, 148
LweI	GCATC	2 cut(s)	26, 190
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	114
MluCI	AATT	1 cut(s)	170
MseI	TTAA	3 cut(s)	63, 120, 132
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	179
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	117, 163
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	63, 120, 132
SatI	GCNGC	2 cut(s)	116, 162
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	3 cut(s)	84, 120, 163
SfaNI	GCATC	2 cut(s)	26, 190
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	22
TasI	AATT	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	63, 120, 132
Tru9I	TTAA	3 cut(s)	63, 120, 132
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	115, 161
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.