RchiOBHm_Chr6g0269651

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
26979505 .. 26980060
556 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGATTGGTCCCATAATTAAAACTGATGGATTTGCCTTTGTTTTTCCTAAAGGTTCGCCTCTTGTACCAGATGTATCAAGGTCGATTCTGCAATTCACCGAGGGAGACTCGATGAAGGAACTTGAACGCAAATGGTTCGGGAACGAAACATCTTGTTCAGGTAGCAACCCCATGGTGTCTGATTCTAACAGTCTTAGCCTTGATAGGTTTTGGGGTCTGTTTCTGATTGCTGGCGTCACTTCGTTATTAGCCCTCATCATATTTGTAGCCTCATTTATATGGAGTTATCAGCACAAAGGAATTAGGGGTATGCTCAAAGTGTTTGACTGTAAAGACCTGAGCTCCCATACTTTTAAGAGGAAGAATTTGGGTGATCAGTTTGAGCGGACGTCACCAAGCTGTAGCATCTACTCAATGAGCCCCTCGAATTTTAGCCATTCAAACCGTACAGATATTACAGAGATGGGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.54

Weight (kDa)

6.82

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 385
AciI CCGC 1 cut(s) 385
AcsI RAATTY 2 cut(s) 364, 427
AcyI GRCGYC 2 cut(s) 234, 389
AfaI GTAC 2 cut(s) 66, 448
AgsI TTSAA 2 cut(s) 125, 441
AluBI AGCT 2 cut(s) 342, 399
AluI AGCT 2 cut(s) 342, 399
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 99
ApoI RAATTY 2 cut(s) 364, 427
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 88, 383, 384
AvaII GGWCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 344, 422
Bbv12I GWGCWC 1 cut(s) 344
BccI CCATC 2 cut(s) 20, 457
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 92, 124
Bpu10I CCTNAGC 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 234, 389
BsaJI CCNNGG 2 cut(s) 99, 171
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
BseDI CCNNGG 2 cut(s) 99, 171
BseMII CTCAG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 344, 422
Bsp143I GATC 1 cut(s) 373
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 1 cut(s) 385
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 99, 171
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 2 cut(s) 234, 389
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 191, 329, 446
BstACI GRCGYC 2 cut(s) 234, 389
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 194, 338
BstDSI CCRYGG 1 cut(s) 171
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 400
BtgI CCRYGG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 65, 447
CviAII CATG 1 cut(s) 172
CviJI RGCY 7 cut(s) 198, 251, 269, 342, 399, 420, 435
CviKI_1 RGCY 7 cut(s) 198, 251, 269, 342, 399, 420, 435
CviQI GTAC 2 cut(s) 65, 447
DdeI CTNAG 2 cut(s) 194, 338
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 344, 422
Eco47I GGWCC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 344, 422
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 175
FaiI YATR 7 cut(s) 14, 173, 260, 278, 280, 311, 348
FatI CATG 1 cut(s) 171
FbaI TGATCA 1 cut(s) 373
FriOI GRGCYC 2 cut(s) 344, 422
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 2 cut(s) 234, 389
Hin1II CATG 1 cut(s) 175
HinfI GANTC 3 cut(s) 85, 107, 182
HphI GGTGA 3 cut(s) 88, 383, 384
Hpy188I TCNGA 2 cut(s) 181, 225
Hpy188III TCNNGA 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 191, 329, 446
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 194, 338
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 2 cut(s) 234, 389
Hsp92II CATG 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 4 cut(s) 81, 144, 216, 350
LweI GCATC 1 cut(s) 414
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 235, 390
MalI GATC 1 cut(s) 375
MbiI CCGCTC 1 cut(s) 385
MboI GATC 1 cut(s) 373
MboII GAAGA 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 344, 422
MluCI AATT 5 cut(s) 15, 92, 300, 364, 427
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 6 cut(s) 69, 94, 263, 280, 351, 433
MseI TTAA 2 cut(s) 18, 354
MslI CAYNNNNRTG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 171
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 235, 390
PfeI GAWTC 2 cut(s) 85, 182
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 8
RsaI GTAC 2 cut(s) 66, 448
RsaNI GTAC 2 cut(s) 65, 447
RseI CAYNNNNRTG 1 cut(s) 277
SacI GAGCTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 18, 354
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 344, 422
SetI ASST 8 cut(s) 55, 83, 163, 209, 339, 344, 392, 401
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 1 cut(s) 400
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 5 cut(s) 15, 92, 300, 364, 427
SsiI CCGC 1 cut(s) 385
SstI GAGCTC 1 cut(s) 344
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 191, 329, 446
TaiI ACGT 1 cut(s) 392
TaqI TCGA 3 cut(s) 83, 110, 425
TasI AATT 5 cut(s) 15, 92, 300, 364, 427
TfiI GAWTC 2 cut(s) 85, 182
Tru1I TTAA 2 cut(s) 18, 354
Tru9I TTAA 2 cut(s) 18, 354
TseFI GTSAC 2 cut(s) 235, 390
Tsp45I GTSAC 2 cut(s) 235, 390
TspDTI ATGAA 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 2 cut(s) 364, 427
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.