Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27052670 .. 27053364

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGTTGGAGAAGAAGCTCGCAAACCCCATGAGAGAAATTAAGGTCCAGAAGCTTGTCCTCAACATCTCCTTCAGTGAGAACAGTGATCGTCTCACCAAGGCTGCCAAGGTCTTGGAGCAACTCAGTGACCAGACCCTTGTTTTCTCCAAAGCTCGGTACATTAGTGGGCTGAAGGGGAAGGAGTATGAGCTTTTGCGTAAGAACTTCAGTGATATTGGCTGCTTTGGATTCGATATTGAGGAGCATATCGATCTTGGAATTAAGATTTGTCATATGGTGATATTGTTGAACTTATATATTCATATTAAGGGTATAGTTGAAATTTGCTTTTTAATCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

114

Amino Acids

13.06

Weight (kDa)

8.44

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 53	2.5e-11	Ribosomal protein L5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	3 cut(s)	58, 193, 194
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	292, 323
AluBI	AGCT	4 cut(s)	19, 55, 155, 193
AluI	AGCT	4 cut(s)	19, 55, 155, 193
Alw26I	GTCTC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	104, 222
ApoI	RAATTY	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	88, 292
AvaII	GGWCC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BbvI	GCAGC	2 cut(s)	91, 209
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	105, 223
BlsI	GCNGC	2 cut(s)	106, 224
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	99, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	99, 108
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	91, 209
BshVI	ATCGAT	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	88, 253
BspCNI	CTCAG	1 cut(s)	138
BspDI	ATCGAT	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	99, 108
BssMI	GATC	2 cut(s)	88, 253
BssT1I	CCWWGG	2 cut(s)	99, 108
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	91, 256
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	88, 253
BstV1I	GCAGC	2 cut(s)	91, 209
BstXI	CCANNNNNNTGG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	252
BtsIMutI	CAGTG	4 cut(s)	82, 91, 133, 217
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	19, 55, 104, 155, 172, 193, 222
CviKI_1	RGCY	7 cut(s)	19, 55, 104, 155, 172, 193, 222
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	90, 255
DpnII	GATC	2 cut(s)	88, 253
Eco130I	CCWWGG	2 cut(s)	99, 108
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	3 cut(s)	58, 193, 194
EcoT14I	CCWWGG	2 cut(s)	99, 108
ErhI	CCWWGG	2 cut(s)	99, 108
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	34
FatI	CATG	1 cut(s)	30
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	105, 223
Fsp4HI	GCNGC	2 cut(s)	105, 223
GluI	GCNGC	2 cut(s)	105, 223
Hin1II	CATG	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	231
HphI	GGTGA	2 cut(s)	88, 292
Hpy188III	TCNNGA	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	82, 169, 175
HpyCH4III	ACNGT	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	88, 253
LmnI	GCTCC	2 cut(s)	118, 244
LpnPI	CCDG	2 cut(s)	62, 146
Lsp1109I	GCAGC	2 cut(s)	91, 209
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	90, 255
MboI	GATC	2 cut(s)	88, 253
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	3 cut(s)	39, 261, 324
MnlI	CCTC	2 cut(s)	71, 235
MseI	TTAA	4 cut(s)	42, 264, 309, 335
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	2 cut(s)	88, 253
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	106, 224
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	4 cut(s)	42, 264, 309, 335
SatI	GCNGC	2 cut(s)	105, 223
Sau3AI	GATC	2 cut(s)	88, 253
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	6 cut(s)	21, 48, 57, 114, 157, 195
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	39, 261, 324
StyI	CCWWGG	2 cut(s)	99, 108
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	234, 252
TasI	AATT	3 cut(s)	39, 261, 324
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	42, 264, 309, 335
Tru9I	TTAA	4 cut(s)	42, 264, 309, 335
TscAI	CASTG	4 cut(s)	82, 91, 133, 217
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	104, 222
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	4 cut(s)	82, 91, 133, 217
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.