RchiOBHm_Chr6g0272971

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
33476677 .. 33477724
1048 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGTACAATGTGTTTCACTATTCTGTTGTGACTTTATCTCGTCAGCTCAAAATGAAATGGTGGATGTCTCTTGGCTTTGCAATTGTGGAGGCTGTGATACTTGCTTGTTATTCACTTCTCTATTCAATCTATGTAGCTAGCCACATGGTCAAGCATGTGATGCTGACAAGTATGTTATTGGTCTGTGGTGTGATGACAATGACATGGATATGTGATACCATTACAGAATCTAGATTTGGTATGATACTTGACCTTTTGGTTACTTGGTTAGCAGCAATATGGTTTTGCTCATATGGTTTTGAGTTTCTATTGACTTTCCATTTGATGTAA

Protein Analysis

109

Amino Acids

12.73

Weight (kDa)

6.88

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 126
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 2 cut(s) 46, 137
AluI AGCT 2 cut(s) 46, 137
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 272
ArsI GACNNNNNNTTYG 1 cut(s) 304
AsuNHI GCTAGC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 2 cut(s) 138, 231
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmsI GCATC 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 141
BseGI GGATG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 3
BspOI GCTAGC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 145, 155, 204
CviJI RGCY 5 cut(s) 46, 75, 92, 137, 141
CviKI_1 RGCY 5 cut(s) 46, 75, 92, 137, 141
CviQI GTAC 1 cut(s) 4
FaeI CATG 3 cut(s) 148, 158, 207
FatI CATG 3 cut(s) 144, 154, 203
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 2 cut(s) 138, 231
GluI GCNGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 148, 158, 207
HinfI GANTC 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 148, 158, 207
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 138, 231
MaeIII GTNAC 2 cut(s) 28, 259
MfeI CAATTG 1 cut(s) 81
MluCI AATT 1 cut(s) 81
MnlI CCTC 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 208
MunI CAATTG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeI CATATG 1 cut(s) 292
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 148, 158, 207
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 158
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 274
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 208
SatI GCNGC 1 cut(s) 273
SetI ASST 3 cut(s) 48, 139, 255
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 208
Sse9I AATT 1 cut(s) 81
SspMI CTAG 2 cut(s) 138, 231
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 138, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.