RchiOBHm_Chr6g0275561

Auxin-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
37420658 .. 37422253
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGATTTCGTCCACTCGGGCCTTAGGGCGCCTGCTAACATTTAACATATACAAGTTTGGGTTCACAACTGCATTTGCTTTTAACTTCTCTAGCATCAATGGCCTTATCATTTCTATGGGTCGCGCAGATGTGGAAGTTGGCGATGTTTATAAAACTTCAATGGTCATATATGTTGCTTTCAGTAGTCAAAGCCCAACTTTGCAGCTTTTGGACTCATCACTCTTTCAAAATGATTTGGTTACTGATATCATAGCAAAGACTACTTTACTTGACACTGCTCAGATTCAGAAACTCAAAATACTCTTTGGTGGTACTAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

8.03

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 27
AccII CGCG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 2 cut(s) 159, 227
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 18, 100
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 2 cut(s) 30, 125
AspS9I GGNCC 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 22
BanI GGYRCC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 214
BfaI CTAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 28
Bse21I CCTNAGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 20, 102
BshNI GGYRCC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 15
BsnI GGCC 2 cut(s) 20, 102
BsoBI CYCGRG 1 cut(s) 15
BspANI GGCC 2 cut(s) 20, 102
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 22, 279
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 125
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 2 cut(s) 20, 102
BtgZI GCGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 2 cut(s) 30, 125
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 312
CviJI RGCY 4 cut(s) 20, 102, 192, 205
CviKI_1 RGCY 4 cut(s) 20, 102, 192, 205
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 2 cut(s) 22, 279
DinI GGCGCC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
FaiI YATR 8 cut(s) 47, 49, 116, 150, 167, 169, 171, 251
FalI AAGNNNNNCTT 2 cut(s) 181, 213
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 90
GlaI GCGC 2 cut(s) 29, 124
GluI GCNGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 2 cut(s) 20, 102
HhaI GCGC 2 cut(s) 30, 125
Hin1I GRCGYC 1 cut(s) 28
Hin6I GCGC 2 cut(s) 28, 123
HinP1I GCGC 2 cut(s) 28, 123
HinfI GANTC 2 cut(s) 212, 283
Hpy166II GTNNAC 2 cut(s) 12, 63
Hpy188I TCNGA 2 cut(s) 282, 288
Hpy8I GTNNAC 2 cut(s) 12, 63
HpyCH4V TGCA 2 cut(s) 71, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 22, 279
Hsp92I GRCGYC 1 cut(s) 28
HspAI GCGC 2 cut(s) 28, 123
KasI GGCGCC 1 cut(s) 27
LpnPI CCDG 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 238
MluCI AATT 1 cut(s) 316
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 1 cut(s) 206
MseI TTAA 3 cut(s) 42, 81, 319
MslI CAYNNNNRTG 1 cut(s) 113
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 99
NarI GGCGCC 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 206
PsiI TTATAA 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 42, 81, 319
SatI GCNGC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 206
SetI ASST 1 cut(s) 207
SfaNI GCATC 1 cut(s) 102
SfoI GGCGCC 1 cut(s) 29
SgeI CNNG 7 cut(s) 27, 29, 43, 64, 102, 134, 281
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 316
SspDI GGCGCC 1 cut(s) 27
SspMI CTAG 1 cut(s) 90
TasI AATT 1 cut(s) 316
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 3 cut(s) 42, 81, 319
Tru9I TTAA 3 cut(s) 42, 81, 319
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 202
TspRI CASTG 1 cut(s) 280
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.