RchiOBHm_Chr6g0275581

U6 snRNA-associated Sm-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
37458053 .. 37459619
1567 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGATTCTTGGTGACGTGGAAGAAATTGTTACCTTTGTGGAAATTGATGATGAAACTTATGAAGAGATTGTCCGGACTACAAAGAGGACAGTTCCATATCTGTTTGTCAGAGGAGACGGTGTCATCCTTGTTTCACCCCCACTAAGGACAGCTTGA

Protein Analysis

51

Amino Acids

5.8

Weight (kDa)

4.32

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 144
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 23, 126
BcoDI GTCTC 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 72
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 91, 119
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 123
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
DdeI CTNAG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 108
FaiI YATR 2 cut(s) 60, 97
FalI AAGNNNNNCTT 1 cut(s) 136
FokI GGATG 1 cut(s) 110
HapII CCGG 1 cut(s) 73
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 73
HphI GGTGA 2 cut(s) 23, 126
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 91, 119
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 15
Kpn2I TCCGGA 1 cut(s) 72
LpnPI CCDG 1 cut(s) 86
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 11, 28
MboII GAAGA 2 cut(s) 32, 74
MluCI AATT 2 cut(s) 24, 42
MnlI CCTC 2 cut(s) 78, 104
MroI TCCGGA 1 cut(s) 72
MspI CCGG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 119
SetI ASST 3 cut(s) 18, 35, 154
SgeI CNNG 4 cut(s) 20, 28, 85, 140
Sse9I AATT 2 cut(s) 24, 42
TaaI ACNGT 2 cut(s) 91, 119
TaiI ACGT 1 cut(s) 18
TasI AATT 2 cut(s) 24, 42
TfiI GAWTC 1 cut(s) 4
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 66, 75
Tth111I GACNNNGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.