RchiOBHm_Chr6g0277271

methyltransferase At1g78140, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
39757002 .. 39760931
3930 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 159 bp
ATGGGCACAAGCTTGCGTCACTTCTCTACAACAGTATTCTGGATACTATGGGCCCAAACAATTGTGGTTGCTGAAATTAGCAGAGTACTACGACCTGGTGGGGTGTTTGTTGCAACAACTTATATACTTGACGTGGGCTTTCTATGGAGGAGTCCTTGA

Protein Analysis

52

Amino Acids

5.9

Weight (kDa)

10.67

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030320)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275481 RchiOBHm_Chr6g0277271

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 87
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
AoxI GGCC 1 cut(s) 51
ApaI GGGCCC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 51, 52
BaeGI GKGCMC 2 cut(s) 8, 55
BanII GRGCYC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 36
BmcAI AGTACT 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 51, 52
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 96
BseSI GKGCMC 2 cut(s) 8, 55
BshFI GGCC 1 cut(s) 53
BsnI GGCC 1 cut(s) 53
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 8, 55
BspANI GGCC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSLI GKGCMC 2 cut(s) 8, 55
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 53
BtrI CACGTC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 51, 52
CseI GACGC 1 cut(s) 5
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 86
CviJI RGCY 3 cut(s) 12, 53, 138
CviKI_1 RGCY 3 cut(s) 12, 53, 138
CviQI GTAC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 55
FaiI YATR 4 cut(s) 49, 123, 125, 145
FriOI GRGCYC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 53
HgaI GACGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 132
LpnPI CCDG 3 cut(s) 25, 81, 108
MabI ACCWGGT 1 cut(s) 94
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 17
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 8, 55
MluCI AATT 2 cut(s) 60, 75
MnlI CCTC 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 53
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 51, 52
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
Sau96I GGNCC 2 cut(s) 51, 52
ScaI AGTACT 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 8, 55
SetI ASST 3 cut(s) 14, 97, 135
SexAI ACCWGGT 1 cut(s) 94
SgeI CNNG 7 cut(s) 21, 25, 52, 107, 108, 140, 145
Sse9I AATT 2 cut(s) 60, 75
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 135
TasI AATT 2 cut(s) 60, 75
TatI WGTACW 1 cut(s) 85
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.