Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42262800 .. 42265576

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCATGTGGACTGTGGTGGCAGTGAGTTTAGTTGCTTTGCTACTGATCGATATGTATTACTCACTGGTATATCAAATGGAGGAACCTCAAAATGCAATGGGCTTCTCCCACCTGGTTCCATGGGCCTGCCTCTCATTGGAGCTGAGACCCTCCATTTCAATAAATATATCAAAATCATTGAAGGTCTTATGCCCTTGCCATTGAATGTCCCTGGTACTGCATATTATAATTGTACAAAAGGATTTACAATTCCAGAAGGTTGGATGATTGTGCTTGTCAGCTCTGCACTTCACTTGAGTTCCAACTTCAAGGATCCAATTGAGTTCAATCCATGGTGTTGGAACTTGGAAGGCAGTGTCCTTGGCAATAGTGCTGAGTACTGTAGAGTTTTCTTGGCCACCTTTCTTCATGTATTGATCATCACCACATACAGGTGGACAATAATCAAAGGGGTTCGCATTGCTAGAACTCCTATGTTGGGATTTGGGGATGGCATTCAGATGAAGTTGTCAGAAAAGATTTACTATTCTCATCACTATTGTAGTTCCTTTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

7.58

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AclWI	GGATC	2 cut(s)	308, 321
AcoI	YGGCCR	1 cut(s)	396
AfaI	GTAC	3 cut(s)	217, 235, 380
AfiI	CCNNNNNNNGG	3 cut(s)	137, 432, 479
AgsI	TTSAA	5 cut(s)	160, 182, 205, 310, 328
AjnI	CCWGG	2 cut(s)	112, 211
AluBI	AGCT	2 cut(s)	143, 282
AluI	AGCT	2 cut(s)	143, 282
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	308, 321
AoxI	GGCC	2 cut(s)	124, 396
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	313
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	2 cut(s)	114, 213
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	114, 213
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	85, 118, 315
BmrFI	CCNGG	2 cut(s)	114, 213
BpuEI	CTTGAG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	120, 211, 332, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 432, 479
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	2 cut(s)	103, 459
BseBI	CCWGG	2 cut(s)	114, 213
BseCI	ATCGAT	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	120, 211, 332, 361
BseGI	GGATG	2 cut(s)	270, 496
BseLI	CCNNNNNNNGG	3 cut(s)	137, 432, 479
BseMI	GCAATG	2 cut(s)	103, 459
BseMII	CTCAG	2 cut(s)	135, 366
BseNI	ACTGG	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	126, 398
BshVI	ATCGAT	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	137, 432, 479
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	126, 398
Bso31I	GGTCTC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	46, 313, 417
Bsp19I	CCATGG	2 cut(s)	120, 332
BspANI	GGCC	2 cut(s)	126, 398
BspCNI	CTCAG	2 cut(s)	136, 367
BspDI	ATCGAT	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	85, 118, 315
BspPI	GGATC	2 cut(s)	308, 321
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	103, 459
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	120, 211, 332, 361
BssMI	GATC	3 cut(s)	46, 313, 417
BssT1I	CCWWGG	3 cut(s)	120, 332, 361
Bst2UI	CCWGG	2 cut(s)	114, 213
Bst4CI	ACNGT	2 cut(s)	14, 383
BstAUI	TGTACA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	144, 375
BstDSI	CCRYGG	2 cut(s)	120, 332
BstF5I	GGATG	2 cut(s)	270, 496
BstKTI	GATC	3 cut(s)	49, 316, 420
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	46, 313, 417
BstNI	CCWGG	2 cut(s)	114, 213
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	112, 211
BstSFI	CTRYAG	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	2 cut(s)	261, 339
BstYI	RGATCY	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	126, 398
BsuTUI	ATCGAT	1 cut(s)	49
BtgI	CCRYGG	2 cut(s)	120, 332
BtsCI	GGATG	2 cut(s)	270, 496
BtsI	GCAGTG	2 cut(s)	28, 361
BtsIMutI	CAGTG	3 cut(s)	28, 63, 361
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	216, 234, 379
CviAII	CATG	4 cut(s)	5, 121, 333, 410
CviJI	RGCY	5 cut(s)	103, 126, 143, 282, 398
CviKI_1	RGCY	5 cut(s)	103, 126, 143, 282, 398
CviQI	GTAC	3 cut(s)	216, 234, 379
DdeI	CTNAG	2 cut(s)	144, 375
DpnI	GATC	3 cut(s)	48, 315, 419
DpnII	GATC	3 cut(s)	46, 313, 417
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	3 cut(s)	120, 332, 361
Eco31I	GGTCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	112, 211
EcoT14I	CCWWGG	3 cut(s)	120, 332, 361
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	120, 332, 361
FaeI	CATG	4 cut(s)	8, 124, 336, 413
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	4, 120, 332, 409
FbaI	TGATCA	1 cut(s)	417
FokI	GGATG	2 cut(s)	277, 503
FspBI	CTAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	126, 398
Hin1II	CATG	4 cut(s)	8, 124, 336, 413
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	10, 438
Hpy188I	TCNGA	2 cut(s)	501, 514
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	10, 438
HpyAV	CCTTC	3 cut(s)	176, 251, 344
HpyCH4III	ACNGT	2 cut(s)	14, 383
HpyCH4V	TGCA	4 cut(s)	4, 96, 221, 287
HpyF3I	CTNAG	2 cut(s)	144, 375
Hsp92II	CATG	4 cut(s)	8, 124, 336, 413
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	46, 313, 417
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	8 cut(s)	51, 99, 126, 140, 198, 225, 267, 418
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	1 cut(s)	465
MalI	GATC	3 cut(s)	48, 315, 419
MboI	GATC	3 cut(s)	46, 313, 417
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	229, 249, 318
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	242, 320, 327
MnlI	CCTC	4 cut(s)	74, 97, 141, 161
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	433, 500
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	114, 213
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	114, 213
NcoI	CCATGG	2 cut(s)	120, 332
NdeII	GATC	3 cut(s)	46, 313, 417
NlaIII	CATG	4 cut(s)	8, 124, 336, 413
NlaIV	GGNNCC	3 cut(s)	85, 118, 315
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PctI	GAATGC	1 cut(s)	495
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	112, 211
PspGI	CCWGG	2 cut(s)	112, 211
PspN4I	GGNNCC	3 cut(s)	85, 118, 315
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	217, 235, 380
RsaNI	GTAC	3 cut(s)	216, 234, 379
RseI	CAYNNNNRTG	2 cut(s)	433, 500
Sau3AI	GATC	3 cut(s)	46, 313, 417
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	114, 213
SetI	ASST	8 cut(s)	89, 115, 145, 187, 262, 284, 404, 437
SexAI	ACCWGGT	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	433, 500
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	3 cut(s)	229, 249, 318
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	112, 211
StyI	CCWWGG	3 cut(s)	120, 332, 361
TaaI	ACNGT	2 cut(s)	14, 383
TaqI	TCGA	1 cut(s)	49
TasI	AATT	3 cut(s)	229, 249, 318
TatI	WGTACW	2 cut(s)	233, 378
TscAI	CASTG	3 cut(s)	28, 70, 361
TspDTI	ATGAA	2 cut(s)	398, 518
TspRI	CASTG	3 cut(s)	28, 70, 361
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.