RchiOBHm_Chr6g0279701

F-box protein SKIP16-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
42840775 .. 42841072
298 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGCTGGAGCGGCAGTTGGAGTTCGAGTCCACCGCTCCGAGTCCGAGTCCGTTTCTCTCTCAGAGCCAGATGTATGCTTCCTTGAATCAGCAAATGGAGGTTGCTGCAAAATTTGAGGATTATGAAGACGAGACGAGGATACTTGACTCGCTGAAGATGTTAGAGAAGGAAGAGCCAATTTTGTTGCTCTGGAGGTTGATAAAGGGTTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.4

Weight (kDa)

4.45

Isoelectric Point (pI)

87.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 10, 35
AciI CCGC 2 cut(s) 10, 33
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 91
BciVI GTATCC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 125
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 2 cut(s) 11, 105
BlsI GCNGC 2 cut(s) 12, 106
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 2 cut(s) 26, 211
BsaXI ACNNNNNCTCC 3 cut(s) 11, 29, 41
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BspACI CCGC 2 cut(s) 10, 33
BspCNI CTCAG 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 2 cut(s) 10, 35
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 132
BsuI GTATCC 1 cut(s) 132
CviJI RGCY 2 cut(s) 66, 175
CviKI_1 RGCY 2 cut(s) 66, 175
DdeI CTNAG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 125
FaiI YATR 2 cut(s) 75, 123
Fnu4HI GCNGC 2 cut(s) 11, 105
Fsp4HI GCNGC 2 cut(s) 11, 105
GluI GCNGC 2 cut(s) 11, 105
GsuI CTGGAG 2 cut(s) 26, 211
HinfI GANTC 5 cut(s) 26, 40, 46, 85, 146
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 39, 45, 63
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 7, 40
LpnPI CCDG 2 cut(s) 80, 175
Lsp1109I GCAGC 1 cut(s) 91
MbiI CCGCTC 2 cut(s) 10, 35
MboII GAAGA 3 cut(s) 137, 166, 182
MluCI AATT 2 cut(s) 110, 177
MlyI GAGTC 4 cut(s) 35, 49, 55, 140
MnlI CCTC 4 cut(s) 91, 109, 129, 186
MwoI GCNNNNNNNGC 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 12, 106
PleI GAGTC 4 cut(s) 34, 48, 54, 140
PpsI GAGTC 4 cut(s) 34, 48, 54, 140
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 11, 105
SchI GAGTC 4 cut(s) 35, 49, 55, 140
SetI ASST 2 cut(s) 102, 197
Sse9I AATT 2 cut(s) 110, 177
SsiI CCGC 2 cut(s) 10, 33
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 110, 177
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 1 cut(s) 85
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 39
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.