RchiOBHm_Chr6g0280031

Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
43280817 .. 43281337
521 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGTGAAGCTCAAGAGAATATGTAGGCATGCAAATGTGCTATTGATCTTTGCTCGCTCTTATGGCCTCACTGGGCTTGTCCGTATCAGTTTGAAGGAACATACTGTGATTGAGTCCAAGCCTAAACATTTCCTGGATGACCTTCGTTTGAATAATCCATGGCTTGAGCTTAGAGGATATAGAATTCTATTTTCATGTCAGTCTCTTTTAGATTTCTGA

Protein Analysis

72

Amino Acids

8.5

Weight (kDa)

9.92

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 183
AgsI TTSAA 2 cut(s) 94, 151
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 10, 169
AluI AGCT 2 cut(s) 10, 169
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 158
BspANI GGCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 30, 55
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 30, 55
CviAII CATG 3 cut(s) 29, 159, 195
CviJI RGCY 6 cut(s) 10, 66, 76, 121, 163, 169
CviKI_1 RGCY 6 cut(s) 10, 66, 76, 121, 163, 169
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 3 cut(s) 32, 162, 198
FaiI YATR 7 cut(s) 22, 30, 63, 102, 160, 180, 196
FatI CATG 3 cut(s) 28, 158, 194
FokI GGATG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 32, 162, 198
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 88, 152
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 32, 162, 198
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 57, 119, 146
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 2 cut(s) 77, 167
MslI CAYNNNNRTG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 63
NcoI CCATGG 1 cut(s) 158
NdeII GATC 1 cut(s) 45
NlaIII CATG 3 cut(s) 32, 162, 198
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 33
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 134
SetI ASST 3 cut(s) 12, 144, 171
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 11, 164
SmoI CTYRAG 2 cut(s) 11, 164
SphI GCATGC 1 cut(s) 32
Sse9I AATT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 183
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 183
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.