Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

44454773 .. 44455902

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGAAGGTGTGGAGTACAACACTGGATGAAGTTATTGTATACCCGATTCCTGCAGCACTTTACCTAGCCAAAAATTTGCTTCAGTGCTATATATTTGCATATGTGGATGCCCCGGGTTATCAAATACTGAAGAACCTGAATATTATCAGTACTCAAGAGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

55

Amino Acids

6.33

Weight (kDa)

5.97

Isoelectric Point (pI)

26.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	73, 161
AcuI	CTGAAG	2 cut(s)	65, 149
AfaI	GTAC	2 cut(s)	16, 151
Ama87I	CYCGRG	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	73, 161
AsuC2I	CCSGG	2 cut(s)	113, 114
AvaI	CYCGRG	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	113, 114
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	113, 114
BmeT110I	CYCGRG	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	113, 114
BmsI	GCATC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	113, 114
BsaJI	CCNNGG	2 cut(s)	111, 112
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	111, 112
BseGI	GGATG	2 cut(s)	31, 112
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	111, 112
BssNAI	GTATAC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	31, 112
BstSCI	CCNGG	2 cut(s)	111, 112
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	65
BstZ17I	GTATAC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	31, 112
BtsIMutI	CAGTG	2 cut(s)	20, 89
Cfr9I	CCCGGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	15, 150
CviJI	RGCY	1 cut(s)	68
CviKI_1	RGCY	1 cut(s)	68
CviQI	GTAC	2 cut(s)	15, 150
Eco57I	CTGAAG	2 cut(s)	65, 149
Eco88I	CYCGRG	1 cut(s)	112
FaiI	YATR	5 cut(s)	40, 90, 92, 100, 102
FauNDI	CATATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	38, 119
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	113
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	53, 98
LpnPI	CCDG	4 cut(s)	8, 63, 126, 149
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	65
MboII	GAAGA	1 cut(s)	142
MluCI	AATT	2 cut(s)	73, 161
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	113, 114
NciI	CCSGG	2 cut(s)	113, 114
NdeI	CATATG	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	16, 151
RsaNI	GTAC	2 cut(s)	15, 150
SatI	GCNGC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	113, 114
SetI	ASST	3 cut(s)	9, 66, 138
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	51
SgeI	CNNG	8 cut(s)	35, 55, 62, 77, 124, 125, 126, 148
SmaI	CCCGGG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	73, 161
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	111, 112
TasI	AATT	2 cut(s)	73, 161
TatI	WGTACW	2 cut(s)	14, 149
TfiI	GAWTC	1 cut(s)	46
TscAI	CASTG	2 cut(s)	27, 89
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	17, 42
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	2 cut(s)	27, 89
XapI	RAATTY	2 cut(s)	73, 161
XmaI	CCCGGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.