Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

45442071 .. 45442569

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTCGTATGCATAGTAGAGGAAAGGGTATTTCGGCTTCGGCTCTACTGATTGGTCAGGTGAAGAGTGCTACTGGGAGCAAGATATTGCGTATAATGAAGGCTCATGGTCTTGCTCATGAAATACCAGGGAATTTGTACCACCTCATCAAGAAATCATTCTCAATTAGGAAGTACAAGTGTTTAAACCCGCGCAATGCTGCCGGGATTTTTTTCCTCCTAAATTGTATTAATAAAGGGTTAAATACTGTTTACTCTCTGAACTTTTACTCAAAAAACATTTTAGTGCATGTCCTTCTAATTTCACACGTTTACTCCCTATACTCTCAATTTTGGACCAATAGGTCCATTCCGTTACTCTCCGTCCAAAACTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

10.6

Isoelectric Point (pI)

20.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
AccII	CGCG	1 cut(s)	193
AciI	CCGC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	2 cut(s)	140, 176
AflIII	ACRYGT	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	336, 345
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	336, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbvI	GCAGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	205
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	129, 205
Bme18I	GGWCC	2 cut(s)	336, 345
BmgT120I	GGNCC	2 cut(s)	336, 345
BmrFI	CCNGG	2 cut(s)	129, 205
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	127, 203
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	336, 345
Csp6I	GTAC	2 cut(s)	139, 175
CviAII	CATG	3 cut(s)	107, 119, 290
CviJI	RGCY	3 cut(s)	38, 44, 104
CviKI_1	RGCY	3 cut(s)	38, 44, 104
CviQI	GTAC	2 cut(s)	139, 175
DraI	TTTAAA	1 cut(s)	186
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	336, 345
EcoRII	CCWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	3 cut(s)	110, 122, 293
FaiI	YATR	7 cut(s)	11, 15, 95, 108, 120, 291, 322
FatI	CATG	3 cut(s)	106, 118, 289
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	201
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	110, 122, 293
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	253, 313
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	119, 151
Hpy8I	GTNNAC	2 cut(s)	253, 313
HpyAV	CCTTC	2 cut(s)	94, 305
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	13, 289
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	110, 122, 293
HspAI	GCGC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	44, 60, 114, 141, 217
Lsp1109I	GCAGC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	354
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	5 cut(s)	133, 165, 223, 300, 329
MnlI	CCTC	3 cut(s)	14, 155, 227
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	4 cut(s)	185, 231, 242, 379
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	129, 205
MssI	GTTTAAAC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	193
NciI	CCSGG	1 cut(s)	205
NlaIII	CATG	3 cut(s)	110, 122, 293
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	202
PmeI	GTTTAAAC	1 cut(s)	186
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	336, 345
RsaI	GTAC	2 cut(s)	140, 176
RsaNI	GTAC	2 cut(s)	139, 175
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	185, 231, 242, 379
SatI	GCNGC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	336, 345
ScrFI	CCNGG	2 cut(s)	129, 205
SetI	ASST	4 cut(s)	63, 147, 312, 347
SinI	GGWCC	2 cut(s)	336, 345
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	133, 165, 223, 300, 329
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	127, 203
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	312
TasI	AATT	5 cut(s)	133, 165, 223, 300, 329
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	4 cut(s)	185, 231, 242, 379
Tru9I	TTAA	4 cut(s)	185, 231, 242, 379
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	113, 135
TspGWI	ACGGA	3 cut(s)	342, 352, 365
VpaK11BI	GGWCC	2 cut(s)	336, 345
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.