RchiOBHm_Chr6g0283021

Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
46208318 .. 46210380
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGACGCAAGTCTTTCCCTTGAGTCTTATTACTTATGAATATCTCAAAGTGAATCGGTGTCAAATTTGCATTTCCAGATTTTATGAATGGAAAAAAGATGGTTCCAAGAAGCAGCCTTACTATGTCCATTTTAAGGATGCTCGGCGTCTTCTGTTTGCTGCTCTTTATGATTCGTGGGAGAATTCTGAAGGTGAGAAACTTTACACCTTCACTATCATTACAACTTCTTCATCTTCAGCTTTGGGTGGCTCCATGATGAGTCCTGCTTGTTCTTTTTCATTTATGTTTCTCTGTGTTCTATTACAGATGCTAGTTATTTTGGGTGATAAGGAATCTATTGATACATGGCTAAATGATTCTTCATCTTCCTATTTTGATAAGTTACTTAAACCATATGAAGGGTCTGATTTGCAACAAGGTATTGGAGGTGAGGTAGTGCCACATCAGGATAACTCATTTCTTTATACTGAACCACAAACTTGCACATGTATGTGGCTGACCTTGGAAGATGCAACAGTAGTAAATGGCTGCCTTTGGGCTATTCCTGGCTCTCAAAAGGATGGCCTTGTTAGATGGTTTATTAGAGGTGAAGATGGTGTGACCTTTGATCGGCCTTCCCCTGCGCCTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.81

Weight (kDa)

4.94

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRAP PF02586 15 - 138 2.3e-24 SOS response associated peptidase (SRAP)
PhyH PF05721 138 - 205 4.9e-17 Phytanoyl-CoA dioxygenase (PhyH)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 63, 181
AcuI CTGAAG 2 cut(s) 207, 219
AcyI GRCGYC 1 cut(s) 145
AfiI CCNNNNNNNGG 3 cut(s) 133, 398, 609
AflIII ACRYGT 1 cut(s) 485
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AoxI GGCC 2 cut(s) 562, 611
ApeKI GCWGC 3 cut(s) 112, 158, 528
ApoI RAATTY 2 cut(s) 63, 181
AspLEI GCGC 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 203, 335, 440, 599
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 124, 145, 515
BccI CCATC 4 cut(s) 92, 554, 567, 587
BciT130I CCWGG 1 cut(s) 546
BfaI CTAG 1 cut(s) 311
BisI GCNGC 3 cut(s) 113, 159, 529
BlsI GCNGC 3 cut(s) 114, 160, 530
Bme1390I CCNGG 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 103, 250
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 3 cut(s) 127, 297, 499
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 398, 609
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 142, 565
BseLI CCNNNNNNNGG 3 cut(s) 133, 398, 609
BseXI GCAGC 3 cut(s) 124, 145, 515
BshFI GGCC 2 cut(s) 564, 613
BslI CCNNNNNNNGG 3 cut(s) 133, 398, 609
BsnI GGCC 2 cut(s) 564, 613
Bsp143I GATC 1 cut(s) 607
BspANI GGCC 2 cut(s) 564, 613
BspLI GGNNCC 2 cut(s) 103, 250
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 1 cut(s) 607
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 517
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 627
BstF5I GGATG 2 cut(s) 142, 565
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 1 cut(s) 610
BstMBI GATC 1 cut(s) 607
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 489
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 544
BstV1I GCAGC 3 cut(s) 124, 145, 515
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 564, 613
BtsCI GGATG 2 cut(s) 142, 565
Cac8I GCNNGC 1 cut(s) 627
CfoI GCGC 1 cut(s) 625
CseI GACGC 2 cut(s) 13, 134
CviAII CATG 3 cut(s) 253, 345, 486
DpnI GATC 1 cut(s) 609
DpnII GATC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 207, 219
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 3 cut(s) 256, 348, 489
FatI CATG 3 cut(s) 252, 344, 485
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 113, 159, 529
FokI GGATG 2 cut(s) 149, 572
Fsp4HI GCNGC 3 cut(s) 113, 159, 529
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 624
GluI GCNGC 3 cut(s) 113, 159, 529
HaeIII GGCC 2 cut(s) 564, 613
HgaI GACGC 2 cut(s) 13, 134
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 3 cut(s) 256, 348, 489
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HinfI GANTC 6 cut(s) 22, 52, 170, 259, 332, 356
HphI GGTGA 4 cut(s) 203, 335, 440, 599
Hpy188I TCNGA 2 cut(s) 187, 406
Hpy188III TCNNGA 2 cut(s) 75, 446
HpyAV CCTTC 4 cut(s) 182, 217, 392, 624
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 4 cut(s) 69, 412, 483, 512
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 3 cut(s) 256, 348, 489
HspAI GCGC 1 cut(s) 623
Kzo9I GATC 1 cut(s) 607
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 5 cut(s) 88, 276, 431, 531, 558
Lsp1109I GCAGC 3 cut(s) 124, 145, 515
LweI GCATC 3 cut(s) 127, 297, 499
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 381, 598
MalI GATC 1 cut(s) 609
MboI GATC 1 cut(s) 607
MboII GAAGA 7 cut(s) 140, 219, 225, 351, 357, 518, 602
MluCI AATT 2 cut(s) 63, 181
MlyI GAGTC 2 cut(s) 31, 268
MnlI CCTC 3 cut(s) 419, 424, 578
MseI TTAA 2 cut(s) 132, 387
MslI CAYNNNNRTG 2 cut(s) 488, 490
MspR9I CCNGG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 546
NdeI CATATG 1 cut(s) 394
NdeII GATC 1 cut(s) 607
NlaIII CATG 3 cut(s) 256, 348, 489
NlaIV GGNNCC 2 cut(s) 103, 250
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 489
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 4 cut(s) 52, 170, 332, 356
PkrI GCNGC 3 cut(s) 114, 160, 530
PleI GAGTC 2 cut(s) 30, 267
PpsI GAGTC 2 cut(s) 30, 267
PscI ACATGT 1 cut(s) 485
PshAI GACNNNNGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 103, 250
RseI CAYNNNNRTG 2 cut(s) 488, 490
SaqAI TTAA 2 cut(s) 132, 387
SatI GCNGC 3 cut(s) 113, 159, 529
Sau3AI GATC 1 cut(s) 607
SchI GAGTC 2 cut(s) 31, 268
ScrFI CCNGG 1 cut(s) 546
SetI ASST 9 cut(s) 193, 209, 241, 421, 430, 435, 503, 589, 605
SfaNI GCATC 3 cut(s) 127, 297, 499
SmiMI CAYNNNNRTG 2 cut(s) 488, 490
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 2 cut(s) 63, 181
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 517
TasI AATT 2 cut(s) 63, 181
TfiI GAWTC 4 cut(s) 52, 170, 332, 356
Tru1I TTAA 2 cut(s) 132, 387
Tru9I TTAA 2 cut(s) 132, 387
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 3 cut(s) 112, 158, 528
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 6 cut(s) 51, 99, 219, 267, 351, 411
XapI RAATTY 2 cut(s) 63, 181
XceI RCATGY 1 cut(s) 489
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.