RchiOBHm_Chr6g0283401

protein folding

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
46616800 .. 46617228
429 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGTGTTTATTTTATTTTATTTTATTTTTTTGGGTGAAAGTATATGTAATAATTTGTATACTAAGACTACGCCCCGTACCCAAACCTCGAAACTTACTGAGATCAATCGACAGTATCATGAACCCTAGCAAAGCTTACAAGGTATTGGGTTTGAGTGGCAATGCGAGCAAGCAAGAAATAAAGCAAGCTTACAGGAGATTGGCATTGAAGTACCACCCTGACAAGCACACTAACTCCTCCAAAACCATCAAAGACGATGCCACCCAGAGATTTAAACAGGCCACAGAGGCCTATGAAAGCCTCACGAACCCTAGCAACCACCAGCACTTCCAGCAAGCCTATCATTATTACTATCAGGACATCTTTTATTATTATCATCAGGATGTCTATTTTTATGATAAATATGGTTTATTGCATAAAACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

17.1

Weight (kDa)

9.54

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 45 - 110 1.9e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 58
AfaI GTAC 2 cut(s) 78, 212
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 134, 188
AluI AGCT 2 cut(s) 134, 188
AoxI GGCC 2 cut(s) 279, 288
AsuHPI GGTGA 1 cut(s) 46
BccI CCATC 1 cut(s) 254
BfaI CTAG 2 cut(s) 126, 312
BglI GCCNNNNNGGC 1 cut(s) 287
BmsI GCATC 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 226
BshFI GGCC 2 cut(s) 281, 290
BsnI GGCC 2 cut(s) 281, 290
Bsp143I GATC 1 cut(s) 101
BspANI GGCC 2 cut(s) 281, 290
BspCNI CTCAG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 166
BssMI GATC 1 cut(s) 101
BssNAI GTATAC 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 4 cut(s) 166, 170, 186, 336
BstDEI CTNAG 2 cut(s) 62, 98
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 3 cut(s) 165, 287, 331
BstZ17I GTATAC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 281, 290
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 166, 170, 186, 336
CciI TCATGA 1 cut(s) 117
Csp6I GTAC 2 cut(s) 77, 211
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 134, 188, 281, 290, 300, 338
CviKI_1 RGCY 6 cut(s) 134, 188, 281, 290, 300, 338
CviQI GTAC 2 cut(s) 77, 211
DdeI CTNAG 2 cut(s) 62, 98
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
DraI TTTAAA 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 290
FaeI CATG 1 cut(s) 121
FaiI YATR 9 cut(s) 43, 45, 59, 119, 294, 396, 405, 417, 427
FatI CATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 58
FokI GGATG 1 cut(s) 395
FspBI CTAG 2 cut(s) 126, 312
HaeIII GGCC 2 cut(s) 281, 290
Hin1II CATG 1 cut(s) 121
HindIII AAGCTT 2 cut(s) 132, 186
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 59
Hpy188III TCNNGA 4 cut(s) 118, 304, 356, 380
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 287, 331
HpyF3I CTNAG 2 cut(s) 62, 98
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 8 cut(s) 178, 231, 263, 278, 335, 341, 344, 365
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 126, 312
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MluCI AATT 1 cut(s) 51
MnlI CCTC 4 cut(s) 96, 247, 280, 311
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 165, 287, 331
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 121
PagI TCATGA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 290
RsaI GTAC 2 cut(s) 78, 212
RsaNI GTAC 2 cut(s) 77, 211
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 1 cut(s) 101
SetI ASST 4 cut(s) 88, 136, 144, 190
SfaNI GCATC 1 cut(s) 247
SfiI GGCCNNNNNGGCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 1 cut(s) 51
SseBI AGGCCT 1 cut(s) 290
SspMI CTAG 2 cut(s) 126, 312
StuI AGGCCT 1 cut(s) 290
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 88, 108
TasI AATT 1 cut(s) 51
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 134, 309, 414
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 2 cut(s) 126, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.