RchiOBHm_Chr6g0284401

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
47644170 .. 47646251
2082 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGAGAAGAGAATCCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAATGGTTTGTCAATTTAAAATCATTGCCCGTCCGATCTGTTGCAAAGTCAGAACACATGAGAGAGTGTTTAAGGTCTCTGAGGCGCAACCACAAGGATAGAGTTGGAAGATTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.7

Weight (kDa)

9.44

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 249
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 17, 104
BspCNI CTCAG 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 92
BssMI GATC 2 cut(s) 17, 104
Bst6I CTCTTC 1 cut(s) 2
BstDEI CTNAG 2 cut(s) 52, 149
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 20, 107
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 17, 104
BstV2I GAAGAC 1 cut(s) 63
CfoI GCGC 1 cut(s) 156
CviAII CATG 2 cut(s) 34, 127
CviJI RGCY 1 cut(s) 208
CviKI_1 RGCY 1 cut(s) 208
DdeI CTNAG 2 cut(s) 52, 149
DpnI GATC 2 cut(s) 19, 106
DpnII GATC 2 cut(s) 17, 104
DraI TTTAAA 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 37, 130
FaiI YATR 2 cut(s) 35, 128
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 2 cut(s) 33, 126
FriOI GRGCYC 1 cut(s) 210
GlaI GCGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 37, 130
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 12
Hpy188I TCNGA 4 cut(s) 17, 104, 121, 150
Hpy188III TCNNGA 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 52, 149
Hsp92II CATG 2 cut(s) 37, 130
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 17, 104
LpnPI CCDG 2 cut(s) 6, 219
MalI GATC 2 cut(s) 19, 106
MboI GATC 2 cut(s) 17, 104
MboII GAAGA 3 cut(s) 19, 68, 189
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 144, 182
MseI TTAA 2 cut(s) 86, 140
NdeII GATC 2 cut(s) 17, 104
NlaIII CATG 2 cut(s) 37, 130
PfeI GAWTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 86, 140
Sau3AI GATC 2 cut(s) 17, 104
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 146, 210
SgeI CNNG 6 cut(s) 33, 46, 110, 139, 175, 215
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 82
SstI GAGCTC 1 cut(s) 210
TasI AATT 1 cut(s) 82
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 86, 140
Tru9I TTAA 2 cut(s) 86, 140
TspDTI ATGAA 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.