RchiOBHm_Chr6g0284611

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020581
Physical Location & Seq
Reverse (-)
47876904 .. 47877997
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGTCGTCAATCGCAGATGAAGACTACTCAAGGTCGGTGACCCTAGAAACATCGTTTGGTGATCTCACCGTTGAGCTCTACTACAAGGACGCACCCAGGGCTTGCAGAAACTTCATGGAGCTCTCACGCGGGCATCATTATGACGGTGTCACATTCCACAGAGTCATCAAGAATTTTTTAGTGCAAGCTGGTGATCTTTCTGGGACAGGAAAGGGTATAAAATCAATTTACGGTGCAAAATTTGAGGACGAGATAAAACCCCAGTTGAATCATACTGCAGCGGGCATTCTATCCATGGCAAATACTGGTCCAAATACGAATGGAACCCAGTTCTTCATCACGCTGGCACCATGTCCATCACTGGACGGAAAGCACACCATATTTGGAAGAGTTTGCAGAGGAATGGATACAATCGTAGAAATTGGCAATGTCCCAACTGATGACAATGATAGGTATTCCTTCGTAGTGTTATTCTCGATCATTCTTTTCAACAAGAGTTGGCTTCTACTGTTTGAATTTTCTTCTCAAACCAGACAATGGTTCCAGTCATATTTGTTCCTGAACTAG

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

5.92

Isoelectric Point (pI)

27.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 13 - 152 4.6e-48 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020581)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284611
rosa_roxburghii Rroxscaffold_7G00184540
rosa_rugosa Rorug06G0164600
rosa_samantha Rh6BG277800 Rh6CG279800 Rh6DG272400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 537
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 129, 281
AcsI RAATTY 3 cut(s) 172, 239, 515
AfiI CCNNNNNNNGG 1 cut(s) 537
AgsI TTSAA 3 cut(s) 268, 490, 515
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 3 cut(s) 76, 121, 188
AluI AGCT 3 cut(s) 76, 121, 188
Alw21I GWGCWC 2 cut(s) 78, 123
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 3 cut(s) 172, 239, 515
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 49, 58, 71, 203
AvaII GGWCC 1 cut(s) 308
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 78, 123
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 78, 123
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 400
BfaI CTAG 2 cut(s) 44, 565
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 3 cut(s) 325, 348, 542
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 2 cut(s) 256, 322
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 2 cut(s) 256, 322
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 95, 96, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse1I ACTGG 5 cut(s) 262, 310, 328, 366, 544
Bse3DI GCAATG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 96, 294
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 5 cut(s) 262, 310, 328, 366, 544
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 78, 123
BslFI GGGAC 2 cut(s) 217, 416
BslI CCNNNNNNNGG 1 cut(s) 537
BsmFI GGGAC 2 cut(s) 217, 416
BsmI GAATGC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 78, 123
Bsp143I GATC 3 cut(s) 61, 193, 477
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 2 cut(s) 129, 281
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 325, 348, 542
BspMAI CTGCAG 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 5 cut(s) 262, 310, 328, 366, 544
BssECI CCNNGG 3 cut(s) 95, 96, 294
BssMI GATC 3 cut(s) 61, 193, 477
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 4 cut(s) 70, 146, 233, 510
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 5 cut(s) 103, 131, 186, 283, 345
BstDSI CCRYGG 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 3 cut(s) 64, 196, 480
BstMBI GATC 3 cut(s) 61, 193, 477
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 27
BsuI GTATCC 1 cut(s) 400
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 5 cut(s) 103, 131, 186, 283, 345
Cfr13I GGNCC 1 cut(s) 308
CseI GACGC 1 cut(s) 98
CviAII CATG 3 cut(s) 115, 295, 351
CviJI RGCY 5 cut(s) 76, 101, 121, 188, 502
CviKI_1 RGCY 5 cut(s) 76, 101, 121, 188, 502
DpnI GATC 3 cut(s) 63, 195, 479
DpnII GATC 3 cut(s) 61, 193, 477
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Ecl136II GAGCTC 2 cut(s) 76, 121
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 78, 123
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 2 cut(s) 76, 121
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 76, 121
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 78, 123
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 118, 298, 354
FaiI YATR 8 cut(s) 116, 141, 218, 273, 296, 352, 380, 550
FaqI GGGAC 2 cut(s) 217, 416
FatI CATG 3 cut(s) 114, 294, 350
FauI CCCGC 2 cut(s) 122, 274
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 2 cut(s) 78, 123
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 44, 565
GluI GCNGC 1 cut(s) 279
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 118, 298, 354
HinfI GANTC 2 cut(s) 162, 268
HphI GGTGA 4 cut(s) 49, 58, 71, 203
Hpy188III TCNNGA 3 cut(s) 169, 475, 559
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 4 cut(s) 70, 146, 233, 510
HpyCH4V TGCA 5 cut(s) 105, 184, 236, 278, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 118, 298, 354
Kzo9I GATC 3 cut(s) 61, 193, 477
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 44, 565
MaeIII GTNAC 2 cut(s) 37, 148
MalI GATC 3 cut(s) 63, 195, 479
MboI GATC 3 cut(s) 61, 193, 477
MboII GAAGA 4 cut(s) 32, 325, 399, 513
MhlI GDGCHC 2 cut(s) 78, 123
MluCI AATT 5 cut(s) 172, 225, 239, 420, 515
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 2 cut(s) 238, 392
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 98
NcoI CCATGG 1 cut(s) 294
NdeII GATC 3 cut(s) 61, 193, 477
NlaIII CATG 3 cut(s) 118, 298, 354
NlaIV GGNNCC 3 cut(s) 325, 348, 542
NmuCI GTSAC 2 cut(s) 37, 148
PasI CCCWGGG 1 cut(s) 96
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 2 cut(s) 78, 123
Psp6I CCWGG 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 325, 348, 542
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 2 cut(s) 78, 123
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 61, 193, 477
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 78, 123
SetI ASST 5 cut(s) 35, 78, 123, 190, 455
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 5 cut(s) 172, 225, 239, 420, 515
SsiI CCGC 2 cut(s) 129, 281
SspMI CTAG 2 cut(s) 44, 565
SstI GAGCTC 2 cut(s) 78, 123
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 70, 146, 233, 510
TaqI TCGA 1 cut(s) 476
TasI AATT 5 cut(s) 172, 225, 239, 420, 515
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 2 cut(s) 37, 148
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 2 cut(s) 37, 148
TspDTI ATGAA 3 cut(s) 33, 103, 325
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 3 cut(s) 172, 239, 515
XspI CTAG 2 cut(s) 44, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.