RchiOBHm_Chr6g0286371
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
49732371 .. 49733982
1612 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGGGTGTTCCTGAGATAAATTGGTGCGTAAGTGGTGCTTTCAGGCTAGGTGTTCTCACAGCTCTGATGGGAGGAAATATCACAATTTCTGGGCACCCCAAGACGCAAGAATCATTTGCTCGGATTTCTAGATACTGTGAACAGAACGACATCCACTCTCCATATGTTACTTTTTATGAATCCTTGATGTACTCAACATGGTTGCGTTTTCCTGCAGAAATCAAGTCCGAGACAAGGAAGTTATTCCTACTGAAGAAAGGAGGACAAGAGCTATATGTAGGGCCACTGGGGCGTCATTCTTGCCATCTAATCAAGTACTTTGAGGGAATTGAAAATGTCAGTAAGATTAAGGATGGCTACAATCCAGCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

124

Amino Acids

14.04

Weight (kDa)

8.79

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 2 cut(s) 191, 317
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 332
AluBI AGCT 2 cut(s) 62, 271
AluI AGCT 2 cut(s) 62, 271
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 93
BccI CCATC 3 cut(s) 61, 312, 347
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 47, 129
BfmI CTRYAG 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 150, 358
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 96
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 96
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 12, 372
BstF5I GGATG 2 cut(s) 150, 358
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 150, 358
BtsIMutI CAGTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 2 cut(s) 112, 281
Csp6I GTAC 2 cut(s) 190, 316
CviAII CATG 1 cut(s) 198
CviJI RGCY 5 cut(s) 46, 62, 271, 283, 357
CviKI_1 RGCY 5 cut(s) 46, 62, 271, 283, 357
CviQI GTAC 2 cut(s) 190, 316
DdeI CTNAG 2 cut(s) 12, 372
Eco57I CTGAAG 1 cut(s) 272
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 163, 165, 177, 199, 274, 276
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 1 cut(s) 197
FauNDI CATATG 1 cut(s) 163
FokI GGATG 2 cut(s) 137, 365
FspBI CTAG 2 cut(s) 47, 129
HaeIII GGCC 1 cut(s) 283
HgaI GACGC 2 cut(s) 112, 281
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 1 cut(s) 201
HinfI GANTC 2 cut(s) 110, 179
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 66, 123, 229
Hpy188III TCNNGA 2 cut(s) 11, 129
Hpy8I GTNNAC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 12, 372
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 1 cut(s) 201
LpnPI CCDG 5 cut(s) 24, 28, 75, 225, 272
MaeI CTAG 2 cut(s) 47, 129
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 19, 84, 327
MnlI CCTC 3 cut(s) 65, 254, 316
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeI CATATG 1 cut(s) 163
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 110, 179
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 217
RsaI GTAC 2 cut(s) 191, 317
RsaNI GTAC 2 cut(s) 190, 316
SaqAI TTAA 1 cut(s) 348
Sau96I GGNCC 1 cut(s) 281
ScaI AGTACT 1 cut(s) 317
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 52, 64, 273
SfcI CTRYAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 19, 84, 327
SspMI CTAG 2 cut(s) 47, 129
TaaI ACNGT 1 cut(s) 137
TasI AATT 3 cut(s) 19, 84, 327
TatI WGTACW 2 cut(s) 189, 315
TfiI GAWTC 2 cut(s) 110, 179
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 2 cut(s) 47, 129
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.