RchiOBHm_Chr6g0286651

RAB2A, member RAS oncogene family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
50064871 .. 50067907
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGATTTCGATTTCGATTATGATTTGTTGTTTTGCAGGAGTTGGCAAATCATGCCTTCTTCTTCAATTCACCGACAAGAGCTTCCAGGCCGTGCACGATTTGACTATTGGTGTTGAGTTTGGAGCTAGGATGATTGTTGGAGAGGAAAGATCCCACATTGGAAAAGCAGGTCAAGAGTCATTCAGATCCATTACACGATCCTACTATAGGGGAGCGCTGGCGCTTTGCTTGTCTATGACATCACCAGGTACGCTTTCAATTTCAATGATTCAACCACACTGGATTATCTTGGACTGTTACACTATTATTTCATATATACGAGAACCCATTCTCTCTAGCTATAAGACTGACTTGGAGTTTCACTTGGGCCAATTATGTTCTTGTGCAAGTGCTTCTATTGGAATCAACTCAAAGATTTATTTCCACCACAGCCTGAACCCTTCTCCCTGCCTGCTCCAATTCCTCAATGGCCTCCAGGGTTTTTGGATTGTGCTGAATGCATTCAATTGTGGTGGTAAAGCACTTATTTTGTTTTGTTTTTCTGAGTACATGATTGCTATTCTGGAAACTGCAGCACTTGGGATCTATTTATTCTTCCTTTACTTGAATACTGTAATAGGTGAAGGTTTTGCTTCTGGAAAAATAAGTATTGGAGAAATAGAGGTTTCCGAGATCACCAGATTTGAACGAATCTGGGCCTGCACTCTGCCAGAGGACAAGAAAAAAAACAGTTACATTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0006810 GO:0006886 GO:0006888 GO:0006996 GO:0007030 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0019538 GO:0023052 GO:0030424 GO:0031090 GO:0031594 GO:0031982 GO:0031984 GO:0032482 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033267 GO:0034613 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0036477 GO:0042175 GO:0042886 GO:0042995 GO:0043005 GO:0043025 GO:0043167 GO:0043168 GO:0043170 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043679 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044306 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046907 GO:0048193 GO:0048471 GO:0050789 GO:0050794 GO:0050803 GO:0050807 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0061175 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097159 GO:0097367 GO:0097458 GO:0098588 GO:0098791 GO:0098793 GO:0098794 GO:0098827 GO:0098975 GO:0099175 GO:0120025 GO:0120038 GO:0150034 GO:1901265 GO:1901363 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04152 map04152
Pfam Domains
Protein Families
Ras

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

6.58

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Roc PF08477 11 - 80 9.1e-09 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 12 - 77 3.6e-12 Ras family
Vps62 PF06101 206 - 243 1.9e-06 Vacuolar protein sorting-associated protein 62
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 742
Acc36I ACCTGC 1 cut(s) 158
AclWI GGATC 4 cut(s) 144, 180, 192, 590
AfaI GTAC 2 cut(s) 250, 548
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 7 cut(s) 65, 258, 264, 272, 505, 607, 686
AjnI CCWGG 3 cut(s) 84, 244, 474
AluBI AGCT 3 cut(s) 81, 125, 339
AluI AGCT 3 cut(s) 81, 125, 339
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 4 cut(s) 144, 180, 192, 590
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 4 cut(s) 87, 367, 469, 696
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 327, 500
AspLEI GCGC 2 cut(s) 217, 223
AspS9I GGNCC 2 cut(s) 367, 696
AsuHPI GGTGA 4 cut(s) 61, 234, 632, 667
BaeGI GKGCMC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 86, 246, 476
BfaI CTAG 2 cut(s) 126, 336
BfmI CTRYAG 2 cut(s) 205, 570
BfoI RGCGCY 2 cut(s) 218, 224
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 3 cut(s) 86, 246, 476
BmgT120I GGNCC 2 cut(s) 367, 696
BmrFI CCNGG 3 cut(s) 86, 246, 476
BpmI CTGGAG 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 475
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 3 cut(s) 86, 246, 476
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 685
BshFI GGCC 4 cut(s) 89, 369, 471, 698
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 207
BsmI GAATGC 2 cut(s) 500, 502
BsnI GGCC 4 cut(s) 89, 369, 471, 698
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 5 cut(s) 149, 185, 197, 582, 672
BspANI GGCC 4 cut(s) 89, 369, 471, 698
BspCNI CTCAG 1 cut(s) 535
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 4 cut(s) 144, 180, 192, 590
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 5 cut(s) 149, 185, 197, 582, 672
Bst2UI CCWGG 3 cut(s) 86, 246, 476
Bst4CI ACNGT 3 cut(s) 296, 613, 731
BstAPI GCANNNNNTGC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 219, 452, 700
BstDEI CTNAG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 218, 224
BstHHI GCGC 2 cut(s) 217, 223
BstKTI GATC 5 cut(s) 152, 188, 200, 585, 675
BstMBI GATC 5 cut(s) 149, 185, 197, 582, 672
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 3 cut(s) 86, 246, 476
BstSCI CCNGG 3 cut(s) 84, 244, 474
BstSFI CTRYAG 2 cut(s) 205, 570
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 584
BstX2I RGATCY 3 cut(s) 149, 185, 582
BstYI RGATCY 3 cut(s) 149, 185, 582
BsuRI GGCC 4 cut(s) 89, 369, 471, 698
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 219, 452, 700
CfoI GCGC 2 cut(s) 217, 223
Cfr13I GGNCC 2 cut(s) 367, 696
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 249, 547
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 2 cut(s) 51, 550
CviJI RGCY 8 cut(s) 81, 89, 125, 339, 369, 432, 471, 698
CviKI_1 RGCY 8 cut(s) 81, 89, 125, 339, 369, 432, 471, 698
CviQI GTAC 2 cut(s) 249, 547
DdeI CTNAG 1 cut(s) 543
DpnI GATC 5 cut(s) 151, 187, 199, 584, 674
DpnII GATC 5 cut(s) 149, 185, 197, 582, 672
Eco47III AGCGCT 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 84, 244, 474
EcoT22I ATGCAT 1 cut(s) 502
FaeI CATG 2 cut(s) 54, 553
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FatI CATG 2 cut(s) 50, 549
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 126, 336
GlaI GCGC 2 cut(s) 216, 222
GluI GCNGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 2 cut(s) 218, 224
HaeIII GGCC 4 cut(s) 89, 369, 471, 698
HhaI GCGC 2 cut(s) 217, 223
Hin1II CATG 2 cut(s) 54, 553
Hin6I GCGC 2 cut(s) 215, 221
HinP1I GCGC 2 cut(s) 215, 221
HinfI GANTC 4 cut(s) 176, 268, 402, 690
HphI GGTGA 4 cut(s) 61, 234, 632, 667
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 185, 544, 670
Hpy188III TCNNGA 3 cut(s) 173, 563, 636
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 65, 450, 617
HpyCH4III ACNGT 3 cut(s) 296, 613, 731
HpyCH4V TGCA 6 cut(s) 35, 94, 386, 500, 572, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 2 cut(s) 54, 553
HspAI GCGC 2 cut(s) 215, 221
Kzo9I GATC 5 cut(s) 149, 185, 197, 582, 672
LmnI GCTCC 3 cut(s) 122, 212, 459
Lsp1109I GCAGC 1 cut(s) 584
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 2 cut(s) 126, 336
MaeIII GTNAC 2 cut(s) 296, 731
MalI GATC 5 cut(s) 151, 187, 199, 584, 674
MboI GATC 5 cut(s) 149, 185, 197, 582, 672
MboII GAAGA 3 cut(s) 50, 53, 586
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 3 cut(s) 149, 185, 582
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 65, 258, 371, 458, 505
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 5 cut(s) 136, 473, 482, 655, 706
Mph1103I ATGCAT 1 cut(s) 502
MroXI GAANNNNTTC 2 cut(s) 327, 500
MspR9I CCNGG 3 cut(s) 86, 246, 476
MunI CAATTG 1 cut(s) 505
Mva1269I GAATGC 2 cut(s) 500, 502
MvaI CCWGG 3 cut(s) 86, 246, 476
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 5 cut(s) 149, 185, 197, 582, 672
NlaIII CATG 2 cut(s) 54, 553
NsiI ATGCAT 1 cut(s) 502
PctI GAATGC 2 cut(s) 500, 502
PdmI GAANNNNTTC 2 cut(s) 327, 500
PfeI GAWTC 3 cut(s) 268, 402, 690
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PsiI TTATAA 1 cut(s) 742
Psp6I CCWGG 3 cut(s) 84, 244, 474
PspGI CCWGG 3 cut(s) 84, 244, 474
PspPI GGNCC 2 cut(s) 367, 696
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 3 cut(s) 149, 185, 582
RsaI GTAC 2 cut(s) 250, 548
RsaNI GTAC 2 cut(s) 249, 547
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 5 cut(s) 149, 185, 197, 582, 672
Sau96I GGNCC 2 cut(s) 367, 696
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 86, 246, 476
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 83, 127, 172, 250, 341, 622, 628, 666
SexAI ACCWGGT 1 cut(s) 244
SfcI CTRYAG 2 cut(s) 205, 570
Sse9I AATT 5 cut(s) 65, 258, 371, 458, 505
SspMI CTAG 2 cut(s) 126, 336
StyD4I CCNGG 3 cut(s) 84, 244, 474
TaaI ACNGT 3 cut(s) 296, 613, 731
TaqI TCGA 2 cut(s) 8, 14
TasI AATT 5 cut(s) 65, 258, 371, 458, 505
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 3 cut(s) 268, 402, 690
TscAI CASTG 1 cut(s) 284
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmnI GAANNNNTTC 2 cut(s) 327, 500
XspI CTAG 2 cut(s) 126, 336
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.