RchiOBHm_Chr6g0286821

WD domain, G-beta repeat

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
50236966 .. 50237501
536 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGGACTATGATGCTCTTGGTCTTTGGTGCACCATGATGGCTTATACTGCATATGGAACCAGACTCTTCTCATGTGGAACGAGTGAAGAAGGTGAATCTCATTTGGTGGGGCCATCAAACAGATATATTATGGGTTTAGAAAACTCTCTTTGGTTGCTAATATGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.32

Weight (kDa)

4.35

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw21I GWGCWC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 28
AoxI GGCC 1 cut(s) 110
ApaLI GTGCAC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 2 cut(s) 31, 121
BfaI CTAG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 58, 111
BseSI GKGCMC 1 cut(s) 32
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 32
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 32
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 58, 111
Bst6I CTCTTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 2 cut(s) 34, 72
CviJI RGCY 2 cut(s) 41, 112
CviKI_1 RGCY 2 cut(s) 41, 112
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 2 cut(s) 37, 75
FaiI YATR 9 cut(s) 9, 35, 45, 52, 54, 73, 126, 131, 163
FatI CATG 2 cut(s) 33, 71
FauNDI CATATG 1 cut(s) 52
FspBI CTAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 112
Hin1II CATG 2 cut(s) 37, 75
HinfI GANTC 2 cut(s) 63, 95
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 30, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 37, 75
LpnPI CCDG 1 cut(s) 73
MaeI CTAG 1 cut(s) 169
MboII GAAGA 2 cut(s) 58, 98
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeI CATATG 1 cut(s) 52
NlaIII CATG 2 cut(s) 37, 75
NlaIV GGNNCC 2 cut(s) 58, 111
PfeI GAWTC 1 cut(s) 95
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 58, 111
PspPI GGNCC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 57
SduI GDGCHC 1 cut(s) 32
SetI ASST 1 cut(s) 94
SgeI CNNG 5 cut(s) 29, 46, 72, 84, 93
SmiMI CAYNNNNRTG 1 cut(s) 35
SspMI CTAG 1 cut(s) 169
TfiI GAWTC 1 cut(s) 95
VneI GTGCAC 1 cut(s) 28
XspI CTAG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.