Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

50856088 .. 50858094

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGCATTATCAGTAATCTGAACATCAGCTTCACTTTGTGGGATATCCGTCCATTGTGGAGGCACTACTTCCCGAAAACTCAAGGTCTTATTTTTGTGGTTGATCGCAATGACAGGGATCGAGTTGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATTTGGATGAAATTAGGGATGCTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTTCTGCAATGAATGCTACAGAAATAACTGATAAGCTTGGGCTTCATTCGATCTCTCCGCCAACGTCACTGGAGAAGTACATTCAGAGCACATGCGCAACCTTGGGCGAGGGACTGTACGAGGGATTGGATTGGCTTTCCAACAACATTGCTAGCAAGGCAAGTTCAATAAAATCAGTCTTTTACAGTAATTTTAGCTCATGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

141

Amino Acids

16.07

Weight (kDa)

5.54

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 122	4.7e-38	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	313
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	160
AdeI	CACNNNGTG	1 cut(s)	39
AfaI	GTAC	2 cut(s)	296, 335
AgsI	TTSAA	2 cut(s)	160, 384
AluBI	AGCT	3 cut(s)	30, 253, 414
AluI	AGCT	3 cut(s)	30, 253, 414
Alw21I	GWGCWC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	211
BmsI	GCATC	1 cut(s)	169
BmtI	GCTAGC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	3 cut(s)	115, 231, 363
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	4 cut(s)	145, 159, 172, 184
BseMI	GCAATG	3 cut(s)	115, 231, 363
BseNI	ACTGG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	103, 118, 211, 267
BspACI	CCGC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	115, 231, 363
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	4 cut(s)	103, 118, 211, 267
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	333, 404
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	145, 159, 172, 184
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	4 cut(s)	106, 121, 214, 270
BstMBI	GATC	4 cut(s)	103, 118, 211, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 374
BstNSI	RCATGY	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	145, 159, 172, 184
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	295, 334
CviAII	CATG	2 cut(s)	309, 417
CviJI	RGCY	5 cut(s)	30, 253, 259, 352, 414
CviKI_1	RGCY	5 cut(s)	30, 253, 259, 352, 414
CviQI	GTAC	2 cut(s)	295, 334
DpnI	GATC	4 cut(s)	105, 120, 213, 269
DpnII	GATC	4 cut(s)	103, 118, 211, 267
DraIII	CACNNNGTG	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	312, 420
FaiI	YATR	2 cut(s)	310, 418
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	308, 416
FokI	GGATG	4 cut(s)	152, 166, 179, 191
FspBI	CTAG	1 cut(s)	369
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	312, 420
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	21, 303
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	333, 404
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	148, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 374
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	312, 420
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	103, 118, 211, 267
LpnPI	CCDG	3 cut(s)	100, 136, 272
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	4 cut(s)	105, 120, 213, 269
MboI	GATC	4 cut(s)	103, 118, 211, 267
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	160, 171, 406
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	4 cut(s)	54, 124, 319, 331
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	230, 374
NdeII	GATC	4 cut(s)	103, 118, 211, 267
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	312, 420
NmuCI	GTSAC	1 cut(s)	282
NsbI	TGCGCA	1 cut(s)	313
NspI	RCATGY	1 cut(s)	312
PctI	GAATGC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	296, 335
RsaNI	GTAC	2 cut(s)	295, 334
Sau3AI	GATC	4 cut(s)	103, 118, 211, 267
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	6 cut(s)	32, 88, 255, 284, 320, 416
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	160, 171, 406
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	333, 404
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	121, 266
TasI	AATT	3 cut(s)	160, 171, 406
TatI	WGTACW	1 cut(s)	294
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	183, 242, 251
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	312
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.