RchiOBHm_Chr6g0289201

Transcription initiation factor IIF subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
52349871 .. 52350697
827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGATCAATAAGAAAAAGACACAAGATTTATATCAAAGAAGGCTTATGAAAGCTGCAACTAATGGAGCTGTTGCATTTGGAAAAGTGAACAACTTTGGGAGCAAGCATAGCAAACAAAAAACTTGTTTTGATGATGATGATGATGAAGGGAACATCTCAGATAATGATGATGAGGAACAAGAGGGAGCAAGGAAAAATAGACTTGGACTCAAGAGAAGAGATGGTGATGATGAAGGAAACATCTCAGATAATAGTGATGAGGAAGAAGATGTAGCAAGGAAAAACAGACTTGAACTTGAGAGAATAGGTGGCGATGATGAAGATACAAGTGGAGATGATGACTTTGATAATGATGATAGTGAGAAGGATGATGACTGGAAGCTTGAGGAGATTTTTAGCGATGATGATGAAAATAATACCAAGGAAATAGAAGACTTTGCAACTGAGGTTCCAGTTCCACAAGAACTTACGCATTTGACATGTTTGTTTAATATGAGGTTTCTTTGGATGATGAGGAAGATGATAATAATGAAGAGGAGGGTTGACTCAGTGAATCCGGAAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.9

Weight (kDa)

4.42

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 556
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 3 cut(s) 53, 68, 382
AluI AGCT 3 cut(s) 53, 68, 382
Aor13HI TCCGGA 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 215
BclI TGATCA 1 cut(s) 3
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 438
BpuEI CTTGAG 3 cut(s) 194, 317, 404
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 380, 452
Bse8I GATNNNNATC 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 556
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 373, 513
BseJI GATNNNNATC 1 cut(s) 30
BseMII CTCAG 4 cut(s) 171, 258, 435, 561
BseNI ACTGG 2 cut(s) 380, 452
BseRI GAGGAG 2 cut(s) 401, 550
BseXI GCAGC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 557
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 4 cut(s) 170, 257, 436, 560
BspEI TCCGGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 450
BsrI ACTGG 2 cut(s) 380, 452
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 420
Bst6I CTCTTC 2 cut(s) 211, 527
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 4 cut(s) 157, 244, 444, 547
BstF5I GGATG 2 cut(s) 373, 513
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 438
BtgZI GCGATG 2 cut(s) 327, 414
BtsCI GGATG 2 cut(s) 373, 513
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 104
CviAII CATG 1 cut(s) 480
CviJI RGCY 4 cut(s) 43, 53, 68, 382
CviKI_1 RGCY 4 cut(s) 43, 53, 68, 382
DdeI CTNAG 4 cut(s) 157, 244, 444, 547
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 211, 527
EarI CTCTTC 2 cut(s) 211, 527
Eco130I CCWWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 483
FaiI YATR 5 cut(s) 31, 47, 108, 481, 494
FatI CATG 1 cut(s) 479
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 380, 520
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HapII CCGG 1 cut(s) 557
Hin1II CATG 1 cut(s) 483
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 207, 545, 553
HpaII CCGG 1 cut(s) 557
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 88, 544
Hpy188I TCNGA 2 cut(s) 160, 247
Hpy188III TCNNGA 2 cut(s) 211, 557
Hpy8I GTNNAC 2 cut(s) 88, 544
HpyAV CCTTC 4 cut(s) 33, 140, 227, 358
HpyCH4V TGCA 3 cut(s) 56, 74, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 4 cut(s) 157, 244, 444, 547
Hsp92II CATG 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 556
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 65, 99, 185
LpnPI CCDG 2 cut(s) 361, 465
Lsp1109I GCAGC 1 cut(s) 40
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 7 cut(s) 228, 275, 278, 332, 443, 529, 544
MlyI GAGTC 2 cut(s) 201, 539
MnlI CCTC 9 cut(s) 166, 175, 253, 379, 439, 489, 507, 528, 531
MroI TCCGGA 1 cut(s) 556
MseI TTAA 1 cut(s) 489
MspI CCGG 1 cut(s) 557
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 1 cut(s) 450
NspI RCATGY 1 cut(s) 483
PciI ACATGT 1 cut(s) 479
PfeI GAWTC 1 cut(s) 553
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 201, 539
PpsI GAGTC 2 cut(s) 201, 539
PscI ACATGT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 2 cut(s) 201, 539
SetI ASST 6 cut(s) 55, 70, 310, 384, 450, 500
SmlI CTYRAG 3 cut(s) 209, 296, 383
SmoI CTYRAG 3 cut(s) 209, 296, 383
StyI CCWWGG 1 cut(s) 420
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 555
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 6 cut(s) 62, 159, 246, 333, 423, 545
TspRI CASTG 1 cut(s) 555
XceI RCATGY 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.