Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

52452499 .. 52454855

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGCTTATGGTTTATCACCTTATCTTATAGCTGCCAATAGTTTGTTTAATTTTTTTAAATTTTTTAATGGAATTATGCGAGGATATTTTCTAGATTGCCCACCAAATAAGAGATTGTTGGTAGCGGGATCGAACTTGTGTGGGTTTACACCTCAAGTCTGCCCTTGCCAACTGAACCAACTCTCATTATTTTACTTACTGAAGCCGTCTGCTTTCAAAAAAGCTCCCAGTGGTGCTCCTGCTAATGTGGGTCTTGGCATCTCAAGACTTCGTGGTTCAGCAGGTTCTATAGGCAAGGTAGGTAACGATGAATTTGGCAAGATGTTGCCTCTTATTTTAAAAGAAAACAATGTCAACACCTCTGCTTTGCGATTTGACCACAAAGCAAGAACTTCATTGGCATTTGTTACATTCAGGGCTGATGGTGAGCGCAAATTCTTATTTTTCCGTAATCCAAGTGCTGATCTGATTTTACATGAGTCTGAACTTGAGATAAGTCTTCTTCAACAAGCAAAAACTTTCAATTATGGTTCAGTTCGTTTGATTGATGAATCATGCAGGTTAACTCATTTAGCTGCGATGAACACGGCCAAGAAGTCCGGTTGCATCCTTTCTTATGATCCGAATTTGCGACTGCCATTGTGGCCATCAGCAGAGGCTGCAAGCAAAGAAATAATAAGTGAGGATGAAATAACTGTCCTGGCTGGTGGTGATGATCCTTATGATGATAATATGGTGTTAACAAAGCTTTTTCATCCTAATCTTAAACTTCTGATAGTAACTGAAGGATCAGAGGGTTGCAGATATTACAACTCAAGTACGTCTAATTTCAGGGGTCGTTTTGCTGGTATTAAAGTTAAACCGGTTAATACAACTGGTGCTGGCGATGCATTTGTGAGTGGGATGCTCAAGAGCATAGCTTCTTACTTGAGTCTTTTTCAGGTACCTACTTCTCATGCATATGTGCTGAAGAGTAAATTATGCCTTATATGGCATTTCATAGAAACTAATTGCCTCTGCATCAAGTATGTTGCTATGAGTCTAGCAAAGTGTTGTTTTCTTTTTTCCCCTTTTTTTTATCTGGCTAATTGCATTTTGGGGAGAAAAAATTTTGGTCGGAACTTGCAACTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046835 GO:0050896 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

379

Amino Acids

41.89

Weight (kDa)

9.2

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	69 - 310	8.8e-43	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	275, 552
Acc65I	GGTACC	1 cut(s)	946
AccB1I	GGYRCC	1 cut(s)	946
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	4 cut(s)	139, 617, 713, 799
AcoI	YGGCCR	2 cut(s)	591, 647
AcsI	RAATTY	5 cut(s)	62, 314, 437, 628, 1111
AcuI	CTGAAG	3 cut(s)	224, 807, 992
AfaI	GTAC	2 cut(s)	823, 948
AgeI	ACCGGT	1 cut(s)	865
AgsI	TTSAA	3 cut(s)	220, 509, 526
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	5 cut(s)	35, 227, 578, 751, 923
AluI	AGCT	5 cut(s)	35, 227, 578, 751, 923
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	4 cut(s)	139, 617, 713, 799
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	591, 647
ApeKI	GCWGC	4 cut(s)	5, 35, 578, 662
ApoI	RAATTY	5 cut(s)	62, 314, 437, 628, 1111
AsiGI	ACCGGT	1 cut(s)	865
Asp718I	GGTACC	1 cut(s)	946
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	12, 440, 725
BalI	TGGCCA	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	946
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	22, 565, 649
BccI	CCATC	2 cut(s)	419, 658
BceAI	ACGGC	2 cut(s)	193, 606
BciT130I	CCWGG	1 cut(s)	704
BfaI	CTAG	2 cut(s)	95, 1046
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	2 cut(s)	275, 552
BglI	GCCNNNNNGGC	1 cut(s)	646
BisI	GCNGC	4 cut(s)	6, 36, 579, 663
BlsI	GCNGC	4 cut(s)	7, 37, 580, 664
Bme1390I	CCNGG	1 cut(s)	704
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	704
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	5 cut(s)	270, 618, 880, 897, 1032
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	494
BpuEI	CTTGAG	6 cut(s)	141, 250, 512, 802, 896, 952
BsaWI	WCCGGW	2 cut(s)	602, 865
Bse118I	RCCGGY	1 cut(s)	865
Bse1I	ACTGG	2 cut(s)	231, 883
BseBI	CCWGG	1 cut(s)	704
BseGI	GGATG	4 cut(s)	609, 694, 757, 912
BseNI	ACTGG	2 cut(s)	231, 883
BseXI	GCAGC	3 cut(s)	22, 565, 649
BshFI	GGCC	2 cut(s)	593, 649
BshNI	GGYRCC	1 cut(s)	946
BshTI	ACCGGT	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	603, 866
BsnI	GGCC	2 cut(s)	593, 649
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	131, 466, 622, 718, 791
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	593, 649
BspLI	GGNNCC	1 cut(s)	948
BspMI	ACCTGC	2 cut(s)	275, 552
BspPI	GGATC	4 cut(s)	139, 617, 713, 799
BspT107I	GGYRCC	1 cut(s)	946
BsrFI	RCCGGY	1 cut(s)	865
BsrI	ACTGG	2 cut(s)	231, 883
BssAI	RCCGGY	1 cut(s)	865
BssMI	GATC	5 cut(s)	131, 466, 622, 718, 791
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	1 cut(s)	968
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	667, 886
BstF5I	GGATG	4 cut(s)	609, 694, 757, 912
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	5 cut(s)	134, 469, 625, 721, 794
BstMBI	GATC	5 cut(s)	131, 466, 622, 718, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	646, 662, 890
BstNI	CCWGG	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	702
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	22, 565, 649
BstV2I	GAAGAC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	593, 649
BtgZI	GCGATG	2 cut(s)	596, 903
BtsCI	GGATG	4 cut(s)	609, 694, 757, 912
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	2 cut(s)	275, 552
Cac8I	GCNNGC	2 cut(s)	667, 886
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	822, 947
CspAI	ACCGGT	1 cut(s)	865
CviAII	CATG	3 cut(s)	479, 558, 959
CviQI	GTAC	2 cut(s)	822, 947
DpnI	GATC	5 cut(s)	133, 468, 624, 720, 793
DpnII	GATC	5 cut(s)	131, 466, 622, 718, 791
DraI	TTTAAA	2 cut(s)	61, 342
EaeI	YGGCCR	2 cut(s)	591, 647
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
Eco57I	CTGAAG	3 cut(s)	224, 807, 992
EcoRII	CCWGG	1 cut(s)	702
EcoT22I	ATGCAT	2 cut(s)	895, 964
FaeI	CATG	3 cut(s)	482, 561, 962
FatI	CATG	3 cut(s)	478, 557, 958
FauI	CCCGC	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	964
Fnu4HI	GCNGC	4 cut(s)	6, 36, 579, 663
FokI	GGATG	4 cut(s)	596, 701, 744, 919
Fsp4HI	GCNGC	4 cut(s)	6, 36, 579, 663
FspBI	CTAG	2 cut(s)	95, 1046
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	4 cut(s)	6, 36, 579, 663
HaeIII	GGCC	2 cut(s)	593, 649
HapII	CCGG	2 cut(s)	603, 866
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	482, 561, 962
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	3 cut(s)	358, 567, 744
HindII	GTYRAC	3 cut(s)	358, 567, 744
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	4 cut(s)	482, 554, 934, 1042
HpaI	GTTAAC	2 cut(s)	567, 744
HpaII	CCGG	2 cut(s)	603, 866
HphI	GGTGA	3 cut(s)	12, 440, 725
Hpy166II	GTNNAC	4 cut(s)	150, 358, 567, 744
Hpy188I	TCNGA	6 cut(s)	471, 487, 627, 777, 796, 1122
Hpy188III	TCNNGA	3 cut(s)	95, 267, 913
Hpy8I	GTNNAC	4 cut(s)	150, 358, 567, 744
HpyAV	CCTTC	1 cut(s)	782
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	9 cut(s)	561, 609, 665, 804, 893, 962, 1023, 1095, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	646, 662, 890
HpySE526I	ACGT	1 cut(s)	824
Hsp92II	CATG	3 cut(s)	482, 561, 962
HspAI	GCGC	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	950
KspAI	GTTAAC	2 cut(s)	567, 744
Kzo9I	GATC	5 cut(s)	131, 466, 622, 718, 791
LmnI	GCTCC	2 cut(s)	232, 244
Lsp1109I	GCAGC	3 cut(s)	22, 565, 649
LweI	GCATC	5 cut(s)	270, 618, 880, 897, 1032
MaeI	CTAG	2 cut(s)	95, 1046
MaeII	ACGT	1 cut(s)	824
MaeIII	GTNAC	3 cut(s)	305, 409, 781
MalI	GATC	5 cut(s)	133, 468, 624, 720, 793
MboI	GATC	5 cut(s)	131, 466, 622, 718, 791
MboII	GAAGA	3 cut(s)	494, 497, 985
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	649
MluNI	TGGCCA	1 cut(s)	649
MlyI	GAGTC	3 cut(s)	491, 943, 1051
MmeI	TCCRAC	1 cut(s)	1100
MnlI	CCTC	8 cut(s)	77, 165, 342, 373, 652, 679, 790, 1028
Mox20I	TGGCCA	1 cut(s)	649
Mph1103I	ATGCAT	2 cut(s)	895, 964
MscI	TGGCCA	1 cut(s)	649
MslI	CAYNNNNRTG	1 cut(s)	963
Msp20I	TGGCCA	1 cut(s)	649
MspI	CCGG	2 cut(s)	603, 866
MspR9I	CCNGG	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	3 cut(s)	646, 662, 890
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	5 cut(s)	131, 466, 622, 718, 791
NlaIII	CATG	3 cut(s)	482, 561, 962
NlaIV	GGNNCC	1 cut(s)	948
NsiI	ATGCAT	2 cut(s)	895, 964
PfeI	GAWTC	1 cut(s)	554
PinAI	ACCGGT	1 cut(s)	865
PkrI	GCNGC	4 cut(s)	7, 37, 580, 664
PleI	GAGTC	3 cut(s)	490, 942, 1050
PpsI	GAGTC	3 cut(s)	490, 942, 1050
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	948
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	823, 948
RsaNI	GTAC	2 cut(s)	822, 947
RseI	CAYNNNNRTG	1 cut(s)	963
SatI	GCNGC	4 cut(s)	6, 36, 579, 663
Sau3AI	GATC	5 cut(s)	131, 466, 622, 718, 791
SchI	GAGTC	3 cut(s)	491, 943, 1051
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	5 cut(s)	270, 618, 880, 897, 1032
SfcI	CTRYAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	963
SmlI	CTYRAG	6 cut(s)	156, 265, 491, 817, 911, 931
SmoI	CTYRAG	6 cut(s)	156, 265, 491, 817, 911, 931
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	95, 1046
StyD4I	CCNGG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	554
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	4 cut(s)	5, 35, 578, 662
TspDTI	ATGAA	7 cut(s)	327, 387, 567, 599, 705, 746, 991
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	238
XapI	RAATTY	5 cut(s)	62, 314, 437, 628, 1111
XbaI	TCTAGA	1 cut(s)	94
XspI	CTAG	2 cut(s)	95, 1046
Zsp2I	ATGCAT	2 cut(s)	895, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.