RchiOBHm_Chr6g0289691

DNA repair metallo-beta-lactamase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
52801165 .. 52805907
4743 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGAGTCCTTCTTCAAAGAGACAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTTGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCCTCCTTCAACACTACCCCAAGGCATTAAAGCTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCACTAATACGGCTTTCGATGCCAATCACTGTCCTGCCCTTGACCATTCTTTAGCTGAGGTTAGAAGTTGCTCCGATTTTGGTCAAATTAAAAACCCAAGCTTAAGCCCTTCGATTTTGGACCCAAAAGCAAAAGCACTCTCAGACACCGAGACAAAGCAATGGAGGATAAAACTGAGTCTGTTTCATTCAACAAGAGAAGAACGGAGGGTGGAGTGGTGGATGTGGAGGAAGGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.25

Weight (kDa)

6.19

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AclWI GGATC 1 cut(s) 78
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 16, 129, 381
AluBI AGCT 4 cut(s) 152, 167, 245, 291
AluI AGCT 4 cut(s) 152, 167, 245, 291
Alw26I GTCTC 2 cut(s) 14, 335
AlwI GGATC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 115, 176
BceAI ACGGC 1 cut(s) 216
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 14, 335
BfmI CTRYAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 3 cut(s) 30, 187, 312
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 187, 417
BseJI GATNNNNATC 1 cut(s) 213
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 3 cut(s) 237, 345, 356
BseRI GAGGAG 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 14, 335
Bsp143I GATC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 238, 344, 357
BspLI GGNNCC 3 cut(s) 30, 187, 312
BspPI GGATC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 28
BspTI CTTAAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 221
BstAFI CTTAAG 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 246, 331, 365
BstF5I GGATG 2 cut(s) 187, 417
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 14, 335
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsCI GGATG 2 cut(s) 187, 417
BtsIMutI CAGTG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviJI RGCY 7 cut(s) 152, 167, 188, 203, 245, 291, 297
CviKI_1 RGCY 7 cut(s) 152, 167, 188, 203, 245, 291, 297
DdeI CTNAG 3 cut(s) 246, 331, 365
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaiI YATR 1 cut(s) 430
FokI GGATG 2 cut(s) 194, 424
GsaI CCCAGC 1 cut(s) 156
HapII CCGG 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 2 cut(s) 5, 367
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 265, 334
HpyAV CCTTC 5 cut(s) 19, 135, 199, 309, 415
HpyCH4III ACNGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 3 cut(s) 246, 331, 365
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 185, 266
LpnPI CCDG 3 cut(s) 138, 192, 237
LweI GCATC 1 cut(s) 199
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 4, 401
MflI RGATCY 1 cut(s) 70
MluCI AATT 1 cut(s) 276
MlyI GAGTC 2 cut(s) 14, 376
MnlI CCTC 7 cut(s) 19, 86, 132, 241, 348, 390, 411
MseI TTAA 4 cut(s) 39, 147, 279, 293
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 179
NdeII GATC 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 30, 187, 312
PleI GAGTC 2 cut(s) 13, 375
PpsI GAGTC 2 cut(s) 13, 375
PspFI CCCAGC 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 30, 187, 312
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 1 cut(s) 70
SaqAI TTAA 4 cut(s) 39, 147, 279, 293
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 2 cut(s) 14, 376
ScrFI CCNGG 1 cut(s) 179
SetI ASST 5 cut(s) 154, 169, 247, 252, 293
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 207, 302
TasI AATT 1 cut(s) 276
Tru1I TTAA 4 cut(s) 39, 147, 279, 293
Tru9I TTAA 4 cut(s) 39, 147, 279, 293
TscAI CASTG 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.